PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g089450.1 | ||||||||
Common Name | MTR_2g089450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 29000.7 Da PI: 7.8861 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +v+++G +W+ ++ g+ R++k+c++rw++yl Medtr2g089450.1 14 KGTWTPEEDKKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWLNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+e +++++++lG++ W+ I++ ++ gRt++++k++w++ Medtr2g089450.1 67 RGSFSHEEEETIIKLHEKLGNR-WTMISANLP-GRTDNEIKNYWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.926 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.19E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.22E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.094 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.97E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MVRTPYCDKN GLRKGTWTPE EDKKLIAYVT RYGCWNWRQL PKFAGLERCG KSCRLRWLNY 60 LRPDIKRGSF SHEEEETIIK LHEKLGNRWT MISANLPGRT DNEIKNYWHT TIKKTLVKNK 120 SNTKRGTKKA KDSNSKNHPT MEKPKKLGEM LENNSDFNIT SPPSSQPSTS ASSCISLMDT 180 AATTTISYEN SSLFDDYDDL PFMDAYVSEN FWTEPYIIDS LYVLPNEDSI LLEHEYFSPV 240 YDAELWSHGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 131 | KRGTKKAKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g089450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC165430 | 0.0 | AC165430.3 Medicago truncatula chromosome 2 BAC clone mth2-67a21, complete sequence. | |||
GenBank | AC225513 | 0.0 | AC225513.4 Medicago truncatula clone mth2-96m13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597081.1 | 0.0 | transcription factor MYB14 | ||||
TrEMBL | G7IRM3 | 0.0 | G7IRM3_MEDTR; Myb transcription factor | ||||
STRING | AES67332 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-59 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g089450.1 |
Entrez Gene | 11413233 |
Publications ? help Back to Top | |||
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