PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g089170.1 | ||||||||
Common Name | MTR_2g089170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 20501.8 Da PI: 8.3105 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 63 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+eIr+p + r r +lg+f ta +Aa a+++a+++++g Medtr2g089170.1 63 CNYRGVRQRT-WGKWVSEIREP---N-RgSRLWLGTFTTAIGAALAYDEAARAMYG 113 56*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-11 | 63 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.71E-31 | 63 | 123 | No hit | No description |
PROSITE profile | PS51032 | 21.338 | 64 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 64 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-20 | 64 | 121 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-35 | 64 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MLAKACEKGD GSKSLGKILA RWREYNAQLD AGNDANKPVR KVAAKGSKKG CMKGKGGPEN 60 SRCNYRGVRQ RTWGKWVSEI REPNRGSRLW LGTFTTAIGA ALAYDEAARA MYGSRARLNF 120 PNVSVTRFSD ESPNDSPDAN HLAVSTNTES MIIPDNSGIG VEDSNDMEPT SLCLSIKQEN 180 EEGESEIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 64 | 121 | 5 | 63 | ATERF1 |
3gcc_A | 4e-19 | 64 | 121 | 5 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13132 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g089170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145218 | 0.0 | AC145218.29 Medicago truncatula clone mth2-34l18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597059.2 | 1e-138 | putative dehydration-responsive element-binding protein 2H | ||||
Refseq | XP_024633319.1 | 1e-138 | putative dehydration-responsive element-binding protein 2H | ||||
Swissprot | Q8LFR2 | 3e-47 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | G7IRK1 | 1e-136 | G7IRK1_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | AES67310 | 1e-132 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 4e-39 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g089170.1 |
Entrez Gene | 11408872 |
Publications ? help Back to Top | |||
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