PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g088470.1
Common NameMTR_2g088470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 738aa    MW: 80440.9 Da    PI: 5.6433
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g088470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2068123156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Medtr2g088470.1  68 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 123
                      688999***********************************************999 PP
2START218.62.1e-682584771206
                      HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      ela +a++el+ +a+ ++p+W       +++n++e++++f+++ +     ++ ea+r+s vv+m++++lve+l+d++ qW++ +     +a+tl
  Medtr2g088470.1 258 ELAVAAMEELIGMAQMGDPLWLPTLeggSILNEEEYVRSFPRGIGpkpagFKCEASRESSVVIMNHVNLVEILMDVN-QWSTVFSgivsRAMTL 350
                      57899*****************9999****************999********************************.**************** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      ev+s+g      galq+m+aelq++splvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skv+wveh
  Medtr2g088470.1 351 EVLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHADGTWAVVDVSLDNLRPSP----SARSRRRPSGCLIQEMPNGYSKVIWVEH 440
                      ************************************************************99....5*************************** PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      v++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  Medtr2g088470.1 441 VEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 477
                      ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2147123IPR009057Homeodomain-like
SuperFamilySSF466892.76E-1959126IPR009057Homeodomain-like
PROSITE profilePS5007116.98965125IPR001356Homeobox domain
SMARTSM003891.3E-1966129IPR001356Homeobox domain
CDDcd000862.09E-1968126No hitNo description
PfamPF000464.1E-1868123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
SuperFamilySSF559617.97E-35249479No hitNo description
PROSITE profilePS5084843.642249480IPR002913START domain
CDDcd088753.68E-129253476No hitNo description
SMARTSM002341.9E-64258477IPR002913START domain
PfamPF018522.6E-57259477IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-5357472IPR023393START-like domain
SuperFamilySSF559614.58E-24497729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MFQPNLMEAG QHHQLLPFDM TQNNNNTSES DVPRIREDEL FDSATKSGNS ENQEAANSGE  60
DQEPRAKKKR YHRHTQHQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT  120
QMKTQQERHE NTSLRTENEK LRADNMRFRE ALSNASCPNC GGPTAIGEMS FDEHHLRIEN  180
SRLREEIDRI SAIAAKYVGK PVVSYPLLSP SSVPPRPLEL GIGGFGGQPG MGGDMYGAGD  240
LLRSISGPTE ADKPMIIELA VAAMEELIGM AQMGDPLWLP TLEGGSILNE EEYVRSFPRG  300
IGPKPAGFKC EASRESSVVI MNHVNLVEIL MDVNQWSTVF SGIVSRAMTL EVLSTGVAGN  360
YNGALQVMTA ELQVPSPLVP TRESYFVRYC KQHADGTWAV VDVSLDNLRP SPSARSRRRP  420
SGCLIQEMPN GYSKVIWVEH VEVDDRGVHN LYKQLVSSGH AFGAKRWIAT LDRQCERLAS  480
AMATNIPTVD VGVITNQDGR KSMLKLAERM CISFCAGVSA STAHTWTTLS GTGADDVRVM  540
TRKSVDDPGR PAGIVLSAAT SFWLPVPPKR VFEFLRDENS RSEWDILSNG GVVQEMAHIA  600
NGRDTGNCVS LLRVNSANSS QSNMLILQES CTDTTGSFVI YAPVDIVAMN VVLNGGDPDY  660
VALLPSGFAI LPDGTTTNGG GVGETGHGGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL  720
IACTVERIKA SLSGEVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.40530.0seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g088470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631890.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLG7IKH90.0G7IKH9_MEDTR; Homeobox leucine zipper protein
STRINGAES672500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]