PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g086450.1
Common NameMTR_2g086450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 390aa    MW: 43815 Da    PI: 8.2749
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g086450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.31.8e-334599155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Medtr2g086450.1 45 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 99
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.48942102IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-3143100IPR009057Homeodomain-like
SuperFamilySSF466891.77E-1644100IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-2345100IPR006447Myb domain, plants
PfamPF002492.2E-94798IPR001005SANT/Myb domain
PfamPF143791.7E-24151197IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MYHHHHQGKN IHSSSRMSIP SERHMFLQTG NGSSDSGLVL STDAKPRLKW TPDLHARFIE  60
AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNLHGQSSSN VTHKINTHAT  120
SVSDERLSET NGTHMNKLTL GPQTNNNKDL HISEALQMQI EVQRRLNEQL EVQRHLQLRI  180
EAQGKYLQSV LEKAQETLGR QNLGIVGLEA AKVQLSELVS KVSSQCLNST FSEMKELQGF  240
CPQPNDGSMD SSCLTSSDRS QKEQEIIQNG GFGLRHFNNN NNNHVFMERK EQQATELAGS  300
VQNLRNNEVL KWCVEEVKKN SNFLTPLGNN NELERNHGNL SMNIGVENHL DIGEFQQRNT  360
ARLDLNSRGD NNEGATTCKQ LDLNRFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g086450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1469490.0BT146949.1 Medicago truncatula clone JCVI-FLMt-19I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596817.10.0myb-related protein 2 isoform X2
SwissprotQ9SQQ91e-130PHL9_ARATH; Myb-related protein 2
TrEMBLG7ITS90.0G7ITS9_MEDTR; Myb-like transcription factor family protein
STRINGAES670680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-131G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]