PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g085015.1 | ||||||||
Common Name | MTR_2g085015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25504.7 Da PI: 6.3606 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.8e-16 | 46 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ + ++Wv+eI +p + k+ r++lg++ t+e+Aa a++ a ++l+g Medtr2g085015.1 46 IYKGVRQRNNGNKWVCEILEP---NkKKSRIWLGTYPTPEMAAIAHDVAVLALHG 97 69***************9998...5477*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.01E-26 | 45 | 107 | No hit | No description |
Pfam | PF00847 | 4.2E-12 | 45 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.56 | 46 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-26 | 46 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-26 | 46 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 46 | 107 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-5 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MNLENESTNH YLSSQSNNQN SPSKPNSHKK KTKRGRKKFK ETRHPIYKGV RQRNNGNKWV 60 CEILEPNKKK SRIWLGTYPT PEMAAIAHDV AVLALHGTSA MFNFPDSVSL LPVSKSTSPE 120 DIRETATEFA NTASSSSFVN NLSVVTKPCL VECKSQEIRV LGGDNIENMN NNDDESKAMF 180 FDEEVLFNMP GFLNSMAEGL LITPPSMKSA LDWDNVDCEM DLTLWTE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 40 | KRGRKKFKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g085015.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464925.1 | 1e-169 | dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A072VLE6 | 1e-168 | A0A072VLE6_MEDTR; CBF-like transcription factor | ||||
STRING | GLYMA12G30740.2 | 3e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-39 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g085015.1 |
Entrez Gene | 25487527 |
Publications ? help Back to Top | |||
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