PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g084230.4 | ||||||||
Common Name | MTR_2g084230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 311aa MW: 35101.1 Da PI: 9.6354 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.6 | 4.2e-31 | 98 | 151 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL ++hvkSHLQ+YR+ Medtr2g084230.4 98 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLRIAHVKSHLQMYRS 151 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.218 | 94 | 154 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 94 | 152 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-13 | 96 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-22 | 98 | 153 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-8 | 99 | 150 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAEIHIPSKD VKSESSSGIR AKHASLPIRR KRSFFDLNED AVDDGDDHVI VISEGPCGEI 60 SNNEISSQEG NLSSNNNSSE EGKGRGSTVR QYVRSKMPRL RWTPDLHLSF VHAVERLGGQ 120 ERATPKLVLQ LMNVRGLRIA HVKSHLQMYR SKKLDESGQV LSQKNRAMQG RHHIMDMYGR 180 FNVQGHFGVE NNYLHPSSPL LKQSSYNEIK AHDTSRFHES GVFNNNHVIF RSSSVWDKDF 240 SHLFDVKDAI TRNNIAAIRS SQVSQLLPES KSLSRGDDNG AKHFPWSTYS TSINYQRSSE 300 YTMFGSEVIF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 99 | 153 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 99 | 153 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 99 | 153 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 99 | 153 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.25532 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g084230.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464832.1 | 0.0 | uncharacterized protein LOC25487436 | ||||
Refseq | XP_024633228.1 | 0.0 | uncharacterized protein LOC25487436 | ||||
Refseq | XP_024633229.1 | 0.0 | uncharacterized protein LOC25487436 | ||||
TrEMBL | A0A072VAU2 | 0.0 | A0A072VAU2_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
TrEMBL | A0A072VBV5 | 0.0 | A0A072VBV5_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | XP_004487568.1 | 1e-133 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g084230.4 |
Entrez Gene | 25487436 |
Publications ? help Back to Top | |||
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