PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g083870.1 | ||||||||
Common Name | MTR_2g083870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 262aa MW: 29056.5 Da PI: 6.1041 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.5e-29 | 80 | 138 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + +tY eHnh+ Medtr2g083870.1 80 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTNLLVTYAHEHNHS 138 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-30 | 71 | 140 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-25 | 75 | 140 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-35 | 79 | 139 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.479 | 80 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-25 | 81 | 137 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MYKRRFNTKP LYVADREEPE PELKLEPILE DGPASPSSCE DTKIEESSPK KRREMKKRVV 60 TIPIADVEGS KSRGETYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS 120 RVDPTNLLVT YAHEHNHSLP LPKSHHSSTN AVTATVTAAV DTPSPVESPA ATPQPEDRPI 180 FVTHPDFDLT GDHHAVFGWF DDIVSTGVLV SPICGGVEDV TLTMREEDES LFADLGELPE 240 CSTVFRQRNI PSVFQYSGIT G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-19 | 57 | 140 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 5e-19 | 57 | 140 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1501 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g083870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144536 | 0.0 | BT144536.1 Medicago truncatula clone JCVI-FLMt-4P21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596707.1 | 0.0 | probable WRKY transcription factor 69 | ||||
Swissprot | Q93WV5 | 1e-72 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | G7IM72 | 0.0 | G7IM72_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES66958 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 3e-66 | WRKY DNA-binding protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g083870.1 |
Entrez Gene | 11410007 |
Publications ? help Back to Top | |||
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