PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g082640.1 | ||||||||
Common Name | MTR_2g082640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25545.1 Da PI: 7.5769 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.3e-11 | 73 | 120 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ + +L Medtr2g082640.1 73 SKACREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILIDAVRMVTQL 120 5678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.754 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-7 | 72 | 125 | No hit | No description |
Pfam | PF00010 | 5.3E-9 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.5E-13 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-13 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-8 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00386 | 135 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVSPENTNWL FDYPLIDEIP VSVDGSFAFT WPPPHLSNGG IEMDDSSLVD SDGIKEPGSK 60 KRGRSDSCAP SSSKACREKL RRDRLNDKFV ELGSILEPGR PPKTDKAAIL IDAVRMVTQL 120 RGEAQKLKDS NSGLQEKIKE LKVEKNELRD EKQRLKAEKE KLEQQVKSMN TQPGFLTHPP 180 AIPAAFAHQG QAPSNKLMPF MSYPGVAMWQ FMPPAAVDTS QDHVLRPPVA * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2996 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g082640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051691 | 0.0 | BT051691.1 Medicago truncatula clone MTYF5_F6_F7_F81G-G-2 unknown mRNA. | |||
GenBank | BT147512 | 0.0 | BT147512.1 Medicago truncatula clone JCVI-FLMt-9D16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596613.1 | 1e-170 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-108 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | B7FHX6 | 1e-169 | B7FHX6_MEDTR; BHLH domain class transcription factor | ||||
STRING | AES66864 | 1e-170 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-111 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g082640.1 |
Entrez Gene | 11409489 |