PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g082090.2
Common NameMTR_2g082090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 580aa    MW: 64449.5 Da    PI: 6.2635
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g082090.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.94.1e-1312095781373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+a++++++el ++l+++ ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    +e l++++l++e++P+lkf+
  Medtr2g082090.2 209 LKQLLIACAKAMAENNTELFDRLIETARNAVSINGEPIQRLGAYMVEGLVARTEASGNSIYHALKCREPE---GEELLTYMQLLFEICPYLKFG 299
                      689******************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +++aN aI ea  +e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +gerL+ + +++g+p+ef+  +    
  Medtr2g082090.2 300 YMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGKGLEVVGERLSLMSKKFGIPVEFHG-IPVFG 392
                      ********************************************************9999999*************************.68889 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d++ ++L++++gEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++l+r+s+
  Medtr2g082090.2 393 PDVTRDMLDIRHGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRNSK 486
                      9********************************************************************************************* PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  Medtr2g082090.2 487 ERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAMLLGWKSRNLISASAW 578
                      *************************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.345183560IPR005202Transcription factor GRAS
PfamPF035141.4E-128209578IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDSQQLYSYS MSNAGLPYMS SFPSLPNGLL GSLKVGFGNS PDSPFSSHFD SDTLSAFSDS  60
HEQHNSGEIL SGISPSCNSS LETNHYTQRS FSSINSLKDS LQLYSARNSF LPSNQKIRHA  120
LLELETALMA PDDNEVTTSN SSLGESIKET ASGPRYRSWS NEHQGSQYIQ SQPSHVTSSS  180
RQSNEAVHVE KRRKLEEDSS LQGFPSGDLK QLLIACAKAM AENNTELFDR LIETARNAVS  240
INGEPIQRLG AYMVEGLVAR TEASGNSIYH ALKCREPEGE ELLTYMQLLF EICPYLKFGY  300
MAANGAIAEA CRNEDHIHII DFQIAQGTQW MTLLQALAAR PGGAPHVRIT GIDDPVSKYA  360
RGKGLEVVGE RLSLMSKKFG IPVEFHGIPV FGPDVTRDML DIRHGEALAV NFPLQLHHTA  420
DESVDVNNPR DGLLRLVKSL SPKVVTLVEQ ESNTNTTPFF NRFIETLDYY LAIFESIDVT  480
LSRNSKERIN VEQHCLARDI VNVIACEGKE RVERHELFGK WKSRLTMAGF RQCPLSSYVN  540
SVIRSLLRCY SEHYTLVEKD GAMLLGWKSR NLISASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-622065791375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.149120.0flower| leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g082090.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1920720.0AC192072.2 Medicago truncatula chromosome 2 BAC clone mth2-25f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596568.10.0scarecrow-like protein 21
RefseqXP_024632410.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLG7ITP30.0G7ITP3_MEDTR; GRAS family transcription factor
STRINGAES668190.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-176scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]