PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g081820.2 | ||||||||
Common Name | MTR_2g081820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 437aa MW: 48651.6 Da PI: 6.6048 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6.2e-06 | 327 | 365 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Medtr2g081820.2 327 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 365 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.582 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.85E-7 | 326 | 369 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-11 | 326 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0049 | 327 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-9 | 330 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MADDDQFHHS SGNWWDTASR NMRFNQSGGT SQSSSSTITN NIVDFAWQNS DMVEIKPRSS 60 MENSSVVFHD NQKLQQPQDS STSSDPNLHM MGLGLSSHTL DWNQPSLIGE KGTENSFRSI 120 LEENLSSTRN NFEQENVMGM CQQVNRNNFS LDQNQFSPQY SSGDSNVITS QCLPTNFQMD 180 SSTLYGTPSI LQGSFENRSM SSTFPYPTNN YGLNSNNELN IMPASNNWSN NKVPQFFMRT 240 SPPKQPTNNQ LHFTNNTPFW NASEAPNSVK DVRSTFFPSL QPQFSPSNFD SHSKNISEVS 300 VVKKSGSEPA PKRTRNETPS TLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE 360 YIKFLHEQVT VLSTPYMKSG APSEIQQNSG KLKKCEGTKQ DLKSRGLCLV PVSSTFPVTH 420 ETTVDFWTPT FGGTSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g081820.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464798.1 | 0.0 | transcription factor bHLH123 isoform X2 | ||||
TrEMBL | A0A072VBP1 | 0.0 | A0A072VBP1_MEDTR; BHLH transcription factor-like protein | ||||
STRING | AES66795 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-68 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g081820.2 |
Entrez Gene | 11407905 |
Publications ? help Back to Top | |||
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