PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g081630.1 | ||||||||
Common Name | MTR_2g081630, NF-YC11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YC | ||||||||
Protein Properties | Length: 118aa MW: 12750.8 Da PI: 8.5057 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 105.8 | 2.7e-33 | 21 | 102 | 19 | 99 |
NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k edvkmis aP+++skacelfi elt rsw+ a ++krrtl+k d+a+av tdifdfl+ v ++ Medtr2g081630.1 21 HSLPLARIKKIMKNsSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKEDVASAVIATDIFDFLITLVSNS 102 99**********96269***********************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.49E-27 | 14 | 95 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.8E-20 | 22 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.8E-30 | 23 | 100 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MRQAGAYSGI VNGGIGRTGP HSLPLARIKK IMKNSSEDVK MISGVAPIVF SKACELFIEE 60 LTRRSWIMAI DAKRRTLNKE DVASAVIATD IFDFLITLVS NSDSSTDATT LMQMESI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-30 | 21 | 99 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g081630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136138 | 0.0 | AC136138.30 Medicago truncatula clone mth2-8f9, complete sequence. | |||
GenBank | JQ918303 | 0.0 | JQ918303.1 Medicago truncatula nuclear transcription factor Y subunit C11 (NF-YC11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596537.1 | 3e-81 | nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 5e-31 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | G7ITL2 | 7e-80 | G7ITL2_MEDTR; Nuclear transcription factor Y protein | ||||
STRING | AES66788 | 1e-80 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-33 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g081630.1 |
Entrez Gene | 11407904 |
Publications ? help Back to Top | |||
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