PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g078770.1 | ||||||||
Common Name | MTR_2g078770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SBP | ||||||||
Protein Properties | Length: 172aa MW: 19628.9 Da PI: 8.4159 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.9 | 5.2e-42 | 57 | 133 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C adl+ k+yhrrhkvCevhska+vv+v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ Medtr2g078770.1 57 ICQVESCGADLTFSKRYHRRHKVCEVHSKASVVVVAGMRQRFCQQCSRFHELAEFDESKRSCRRRLARHNERRRKST 133 5**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.9E-34 | 53 | 119 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.479 | 55 | 132 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-38 | 56 | 135 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-32 | 58 | 131 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MEGKQTSVEK VWKDIIFEEI EVEEEEEGGV EDDEKKKGVC VSGRKEPSRG GRFSSPICQV 60 ESCGADLTFS KRYHRRHKVC EVHSKASVVV VAGMRQRFCQ QCSRFHELAE FDESKRSCRR 120 RLARHNERRR KSTAGTCTEG SSTGQKNNDG DWRQIHMNIT SSSGHDFLNF R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-34 | 57 | 131 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g078770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464662.1 | 1e-123 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38741 | 1e-38 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A072VA58 | 1e-121 | A0A072VA58_MEDTR; Squamosa promoter-binding-like protein | ||||
STRING | XP_004488736.1 | 2e-70 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 3e-30 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g078770.1 |
Entrez Gene | 25487309 |
Publications ? help Back to Top | |||
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