PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g078200.1

Common Name

MTR_2g078200

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

TCP

Protein Properties

Length: 295aa MW: 32176.3 Da PI: 7.2964

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g078200.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.7	8.6e-38	18	136	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec.eaesssssasns 85 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++akpai++l+ + + +++++ +++s+++s++ Medtr2g078200.1 18 RGRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQLAHLppwkptlfkQ-QQQKQQnDDVSEEQSQN-- 108 689*************************************************************5555444431.11111111111111111.. PP TCP 86 ssg.........................k 89 ++ + Medtr2g078200.1 109 -ENefrfvqnfsnngnsnsfipfqneipE 136 .1122233333333333333333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-33	19	133	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.792	20	78	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MNGGEIVEVD GGHIIRSRGR KDRHSKVCTA KGPRDRRVRL SAHTAIEFYD VQDRLGFDRP 60 SKALDWLINK AKPAIDQLAH LPPWKPTLFK QQQQKQQNDD VSEEQSQNEN EFRFVQNFSN 120 NGNSNSFIPF QNEIPETASF RNDLKLSLQQ NQNQHVQQHV LFTGNFDGMV TWNSGGGATT 180 IDTGSGGGGG DGFVFHGSSP SPVVFPAVMY GQNQYLSQRG PLQSSYNPSV RAWLDAPATF 240 VAADYRLQAG GSGAGFASGG FSGFRVPARI GGDDEEMHGG LSDRLSSASS DSRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-19	25	78	1	54	Putative transcription factor PCF6
5zkt_B	7e-19	25	78	1	54	Putative transcription factor PCF6
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of torpedo-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269\|PubMed:10363373, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269\|PubMed:17307931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g078200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013464604.1	0.0	transcription factor TCP4
Swissprot	Q9MAH8	9e-64	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A072V996	0.0	A0A072V996_MEDTR; Putative transcription factor TCP family
STRING	XP_004489051.1	1e-138	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24162	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	1e-46	TCP family protein

Link Out ? help Back to Top
Phytozome	Medtr2g078200.1
Entrez Gene	25487262

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]