PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g076780.1 | ||||||||
Common Name | MTR_2g076780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 238aa MW: 26697.6 Da PI: 7.3704 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.4 | 7.3e-28 | 36 | 87 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++keC+kNhA s+Gg+a+DGCgEf+p+ g egt++ ++CaAC+CHRnFHRre+ Medtr2g076780.1 36 NFKECRKNHASSIGGYALDGCGEFLPA-GIEGTIEFFTCAACNCHRNFHRREN 87 79************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-17 | 25 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.2E-25 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.941 | 37 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.0E-26 | 37 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.03E-17 | 160 | 233 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-26 | 164 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.0E-23 | 174 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MANITEPTSY VETTTTSNDH VEETLMNSQS NSFERNFKEC RKNHASSIGG YALDGCGEFL 60 PAGIEGTIEF FTCAACNCHR NFHRRENGVV NEENISLPFN NPRFPQPTPF STVFQTPTGY 120 HHVTGTSRGT TTSLPSSVVH DEAHFPRGYL GEGAVEPIYH GDTYSGGEGS SKSKKRFRSK 180 FTHDQKERML GFAMKSGWKI HKQDENVVEE FCNEIGVKCK TFRVWMYNNK HTLGNKH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-17 | 174 | 232 | 17 | 75 | ZF-HD homeobox family protein |
1wh7_A | 2e-17 | 175 | 232 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g076780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC125474 | 0.0 | AC125474.16 Medicago truncatula clone mth2-16l11, complete sequence. | |||
GenBank | AC152352 | 0.0 | AC152352.12 Medicago truncatula clone mth2-77a17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596393.2 | 1e-179 | zinc-finger homeodomain protein 1 | ||||
Swissprot | A2Z259 | 1e-49 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A396JIQ8 | 1e-178 | A0A396JIQ8_MEDTR; Putative transcription factor ZF-HD family | ||||
TrEMBL | G7IH79 | 1e-178 | G7IH79_MEDTR; Homeobox domain, ZF-HD class protein | ||||
STRING | AES66644 | 1e-178 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02540.1 | 7e-41 | homeobox protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g076780.1 |
Entrez Gene | 11410439 |
Publications ? help Back to Top | |||
---|---|---|---|
|