PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g059540.1 | ||||||||
Common Name | MTR_2g059540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 207aa MW: 23289.6 Da PI: 8.1788 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.4 | 6.4e-38 | 30 | 87 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg++k+kks+ Medtr2g059540.1 30 ALKCPRCNSFNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGILRNVPVGGGSQKSKKSK 87 689***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.1E-33 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.845 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-24 | 31 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MADGNLFCIE EDRRMKTYHN QNNHHHHHLA LKCPRCNSFN TKFCYYNNYN LSQPRHFCKN 60 CRRYWTKGGI LRNVPVGGGS QKSKKSKTAS SSSIPSSAAT TPTPLQPEAD KSDSHSNSDG 120 STIRVNSVIE NEQVNSFRNL IISSSTNDQV HVVQHGDSVM LNHQQFSNEF GSLDWEGGAN 180 TVDQSYWTQS HWSDHVIHSS SLFHLP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g059540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136450 | 0.0 | AC136450.7 Medicago truncatula clone mth2-34d6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595715.2 | 1e-154 | dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A396JAA5 | 1e-153 | A0A396JAA5_MEDTR; Putative transcription factor C2C2-Dof family | ||||
STRING | AES65966 | 1e-154 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-32 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g059540.1 |
Entrez Gene | 11413199 |
Publications ? help Back to Top | |||
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