PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g049610.1 | ||||||||
Common Name | MTR_2g049610, MtrDRAFT_AC158464g6v2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27533.6 Da PI: 7.5533 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.2 | 5.9e-10 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k i++ r+ +f +R ng+ KK +E S ++e+++i++ +g+l +++ Medtr2g049610.1 9 KHIQDWKARKSSFNQRSNGLAKKVSEFSSKFGVEACLIVYDGDGRLLTWP 58 56888899*****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.867 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.0E-6 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-16 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.22E-12 | 2 | 58 | No hit | No description |
PRINTS | PR00404 | 3.1E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-11 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRGKLTIKH IQDWKARKSS FNQRSNGLAK KVSEFSSKFG VEACLIVYDG DGRLLTWPQN 60 SIVVQSILKT YELQKIETTP KIFDVKDYFA NKKNKVEGEI SKVHKEIVMK MYPTWHPCFM 120 NMDGEQLKTF IGILDAKIQA CNHKISMLKK MQQRTENGFM LNTTQMQNVA PKNVVSTHLK 180 PLSDTNRLGE VEELDDFMDW ANQVLDNVAY LDDPVTKPGQ EWETQFMDFD ALPETRDGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g049610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC158464 | 0.0 | AC158464.2 Medicago truncatula chromosome 2 clone mth2-145m24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595578.1 | 0.0 | MADS-box transcription factor 5 | ||||
TrEMBL | Q2HRQ1 | 1e-179 | Q2HRQ1_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES65829 | 1e-180 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 8e-12 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g049610.1 |
Entrez Gene | 11413180 |
Publications ? help Back to Top | |||
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