PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g049305.1
Common NameMTR_2g049305
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CPP
Protein Properties Length: 308aa    MW: 34610.9 Da    PI: 8.2
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g049305.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR21.93.7e-0773106340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +++C+Ck s    +YC+ fa g++C+e C C +C Nk 
  Medtr2g049305.1  73 CRNCKCKIS----NYCDAFATGVYCTEPCLCLECLNKP 106
                      455666655....8**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-471108IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS516349.05972134IPR005172CRC domain
PfamPF036384.5E-472105IPR005172CRC domain
SuperFamilySSF561125.83E-7187284IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.3E-7220259No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSVSYSNLTP LCLYFYRVGE FRILKIEVQA TTNFTRSSVP IAGEDLCQTA PKRKRKCLTL  60
QAQVRSTEER GSCRNCKCKI SNYCDAFATG VYCTEPCLCL ECLNKPINDD TVLQTRRKIE  120
SCNSHVFFPK VIRSSVYFLF NVAVGGDNDC PEIRKCEMAI LREMQKSKKQ KIQEILDAED  180
ASVEANRVFH STNGFSDSNL LGHGTYVSNY CELSFLSRMT AAKTKEFMSE IKFLCKVHHT  240
NLVELVGYAA NHDDPFLIYG SKGSTQQPCH STLTWTTRVQ IVVQFFVLKQ GADLVFPVGV  300
MMKDLAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g049305.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1446561e-100AC144656.12 Medicago truncatula clone mth2-27d4, complete sequence.
GenBankAC1447271e-100AC144727.11 Medicago truncatula clone mth2-8n1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072V6Z40.0A0A072V6Z4_MEDTR; Tesmin/TSO1-like CXC domain protein, putative
STRINGAES658070.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.18e-21Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]