PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g043040.1 | ||||||||
Common Name | MTR_2g043040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25537.4 Da PI: 4.3819 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.7e-16 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr +k +g++v+eIr p++ r+r++lg++++ +Aa+a +aa+ +l+g Medtr2g043040.1 17 SLYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSDVKAARAFDAAMFCLRG 67 57*****999.**********933...5**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.01E-18 | 17 | 76 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.62E-27 | 17 | 77 | No hit | No description |
SMART | SM00380 | 8.3E-30 | 18 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 18 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.994 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-27 | 18 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVKSNMEKIA VERSDSSLYR GVRKRKWGKY VSEIRLPNSR QRIWLGSYDS DVKAARAFDA 60 AMFCLRGSGA KFNFPNDPPE IAGGRSMTHS EIKTAAARFA NSGQVNNEYS GQPDNSTIET 120 PSWSQGTTFL PMDGVSTCYT QVETPSLLEG TTTTLLSSPA LSDVTVQTDS DLGENGLCKD 180 LFSETGLGYT MFPGFYDFCG DFYVPELTNF AYEEENMDGL IIQDSFLWNF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 14 | 77 | 10 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.9205 | 1e-105 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g043040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595363.1 | 1e-173 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | G7IIR3 | 1e-171 | G7IIR3_MEDTR; Putative transcription factor AP2-EREBP family | ||||
STRING | AES65614 | 1e-172 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 7e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g043040.1 |
Entrez Gene | 11441685 |
Publications ? help Back to Top | |||
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