PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g043020.1
Common NameMTR_2g043020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 204aa    MW: 22468.2 Da    PI: 4.4525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g043020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.3e-151967355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +k +g++v+eIr p++   r+r++lg++++a +Aa+a +aa+ +l+g
  Medtr2g043020.1 19 YRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSAVKAARALEAAMFCLRG 67
                     9****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-161776IPR016177DNA-binding domain
CDDcd000187.08E-251777No hitNo description
Gene3DG3DSA:3.30.730.104.6E-251876IPR001471AP2/ERF domain
SMARTSM003801.2E-261881IPR001471AP2/ERF domain
PROSITE profilePS5103218.8481875IPR001471AP2/ERF domain
PRINTSPR003671.9E-81930IPR001471AP2/ERF domain
PfamPF008478.8E-91967IPR001471AP2/ERF domain
PRINTSPR003671.9E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVKSNVEKTA AERSDSSMYR GVRKRKWGKY VSEIRLPNSR QRIWLGSYDS AVKAARALEA  60
AMFCLRGSGA KFNLPNDPPE IAGGRSMTHS EIKTAAASFA NSGQLEKTSF ETPSSSEGTT  120
TTLLSMELPS PALSDVTVQT DCDSKENGLF SDMFLETGSG CSMFPGFDDD FCHDFYVPEM  180
PDFDYVEENM DGLVIPDLFL WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1314771074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248680.0glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g043020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595361.21e-151ethylene-responsive transcription factor ERF017
TrEMBLG7IIR11e-149G7IIR1_MEDTR; Ethylene-responsive transcription factor ERF017-like protein
STRINGAES656121e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-46ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]