PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g041430.3
Common NameMTR_2g041430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRF
Protein Properties Length: 357aa    MW: 40801.9 Da    PI: 8.893
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g041430.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85e-2576119144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Medtr2g041430.3  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
                      79***************************************997 PP
2QLQ57.15.4e-20742237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+k
  Medtr2g041430.3  7 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRK 42
                     8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.5E-11642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.7E-15741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.671742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9876120IPR014977WRC domain
PfamPF088791.2E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNKNKFPFTP SQWQELEHQA LIYKYMASGI SIPPDLLFTI RKSYLDSPLS SRLFPSQQHQ  60
HFGWNYLQMG LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV  120
VKTATTNTNN INNASSLTKN SPASLTNSSS SLSFETQQHH QNYPQNSCYA SNLQQSFMYP  180
HTTSRSTLSS GIGLSFEDNS APLFLDSNTC SQNNTDYRNR YVYGQKEEVD EYAFFKEPSG  240
SSTMKSFSTS SMEHDPWQLT PLTMSSSSSS STSLRQRSYS ALSNDYSCLQ LQSLSEHSKQ  300
DEPQKTVHRF FDEWPHKGRD QWLDLDDKSS TTQLSISIPS STHNFPTFTS RNHHGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g041430.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098467e-66AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633316.10.0growth-regulating factor 1 isoform X1
TrEMBLA0A072V7F00.0A0A072V7F0_MEDTR; Growth-regulating factor-like protein
STRINGXP_004513476.11e-170(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-55growth-regulating factor 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]