PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g041430.1 | ||||||||
Common Name | MTR_2g041430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GRF | ||||||||
Protein Properties | Length: 358aa MW: 40918.1 Da PI: 8.893 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.8 | 5.1e-25 | 76 | 119 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Medtr2g041430.1 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119 79***************************************997 PP | |||||||
2 | QLQ | 57.1 | 5.4e-20 | 7 | 42 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy+a++ +Pp+Ll+ i+k Medtr2g041430.1 7 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRK 42 8******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.5E-11 | 6 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.7E-15 | 7 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.671 | 7 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-20 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MNKNKFPFTP SQWQELEHQA LIYKYMASGI SIPPDLLFTI RKSYLDSPLS SRLFPSQQHQ 60 HFGWNYLQMG LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV 120 VKTATTNTNN INNASSLTKN SPASLTNSSS SLSFETQQHH QNYPQNSCYA SNLQQSFMYP 180 HTTSRSTLSS GIGLSFEDNS APLFLDSNTC SQNNTDYRNR YVYGQKEEVD EYAFFKEPSG 240 SSTMKSFSTS SMEHDPWQLT PLTMSSSSSS STSLRQRSYS ALSNDYSCLQ LQSLSEHSKQ 300 DEPQKTVHRF FDEWPHKGRD QWLDLDDKSS TTQLSISIPS STHNFPTFTS RNHHVTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g041430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009846 | 7e-66 | AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024633316.1 | 0.0 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A072V671 | 0.0 | A0A072V671_MEDTR; Growth-regulating factor-like protein | ||||
STRING | XP_004513476.1 | 1e-169 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-56 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g041430.1 |
Entrez Gene | 25486490 |
Publications ? help Back to Top | |||
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