PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g041090.1
Common NameMTR_2g041090, NF-YA3
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 236aa    MW: 25972 Da    PI: 9.933
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g041090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.64.3e-3377133158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRhkhAl+R RgsgGrF
  Medtr2g041090.1  77 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHKHALNRVRGSGGRF 133
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.1E-3775136IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.59976136IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-2879133IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-2579101IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686081101IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.0E-25110133IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKPFLSLNHP DTEFNCSQVD HNQSMAQTHA HYPYSDPIFA GSLVAYAPHA VNQPQMLPQM  60
MGLASTRVAL PLDLAQDGPI YVNAKQYHGI LRRRQSRAKL EAQNKLIKNR KPYLHESRHK  120
HALNRVRGSG GRFLSTKQLS ESNAEFVTGS HSGPGNNYQK EDTSEMESHH SSKTRDNISS  180
ITSCSDRTCF SGNSFSFRQP EHMFLGNSPN MGGGAPQCSG GLTFGGTKQR ASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2277138263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.125600.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g041090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182680.0JQ918268.1 Medicago truncatula nuclear transcription factor Y subunit A3 (NF-YA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574919.11e-145nuclear transcription factor Y subunit A-4-like
TrEMBLI3TAV31e-176I3TAV3_MEDTR; CCAAT-binding transcription factor
STRINGXP_004513462.11e-144(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-43nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]