PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g039620.2
Common NameMTR_2g039620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 419aa    MW: 47432.9 Da    PI: 9.7883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g039620.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11225269554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N+ f+ Lr llP+      +K +Ka+iL  A e ++sL
  Medtr2g039620.2 225 HMISERRRREKLNENFQALRALLPQG-----TKKDKASILITAKETLRSL 269
                      8899********************97.....7***********9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-15218288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-10218273No hitNo description
PROSITE profilePS5088813.999220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14224286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8225269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MFLFLQEARI KTVVFMGCNK GEIELGFLNM SQADIQTALS SLFPEDFSRQ TQQINHNPPS  60
SSSSSMRSLS TAGSPEYSSL IFNIPPGTSP PQFSPDLTQL GGVNIPPMRP VSNTLLPLQL  120
QQLPQITPTQ LYPTTQIEND VIMRAIQNVL STPPSHQHQP QQNYVAHPEA SAFGRYRHDK  180
SPNIGSNFRR QSLMKRSFAF FRSLNLMRMR DRNQAARPSS NQLHHMISER RRREKLNENF  240
QALRALLPQG TKKDKASILI TAKETLRSLM AEIDKLSKRN QELMSQQLPA ANKESTKTKE  300
IVKFSSYERL NVRVLHVTGS SSSEDESMVV DLQVNMMGQI SQVDVLIRLL EFLNQDQHVN  360
LVSMDATNTN HAPGNDLLHQ ITFRLRITQI SEWDEEAFQE AVRRVVADLI QSQVDQNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233ERRRRE
2229234RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.212170.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g039620.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1385260.0AC138526.28 Medicago truncatula clone mth2-17n24, complete sequence.
GenBankAC1487750.0AC148775.2 Medicago truncatula chromosome 2 clone mth2-62i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631492.10.0putative transcription factor bHLH041 isoform X1
TrEMBLG7IIK90.0G7IIK9_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES654510.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-51bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]