PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g039620.1
Common NameMTR_2g039620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 524aa    MW: 59406.4 Da    PI: 7.4159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g039620.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-11330374554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N+ f+ Lr llP+      +K +Ka+iL  A e ++sL
  Medtr2g039620.1 330 HMISERRRREKLNENFQALRALLPQG-----TKKDKASILITAKETLRSL 374
                      8899********************97.....7***********9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-15323393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-10323378No hitNo description
PROSITE profilePS5088813.999325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14329391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8330374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MEGVFSLPVA VRTEFIHSLM QSLGCSYICL WAYDIMLSNR LSFLDGFYNV INDQLPSSSL  60
GSVAQQLFNQ YRILSFDVND DRVPGLAFRN QRPYLELQQL ELLTLSSTEI QTQFYQTVVF  120
MGCNKGEIEL GFLNMSQADI QTALSSLFPE DFSRQTQQIN HNPPSSSSSS MRSLSTAGSP  180
EYSSLIFNIP PGTSPPQFSP DLTQLGGVNI PPMRPVSNTL LPLQLQQLPQ ITPTQLYPTT  240
QIENDVIMRA IQNVLSTPPS HQHQPQQNYV AHPEASAFGR YRHDKSPNIG SNFRRQSLMK  300
RSFAFFRSLN LMRMRDRNQA ARPSSNQLHH MISERRRREK LNENFQALRA LLPQGTKKDK  360
ASILITAKET LRSLMAEIDK LSKRNQELMS QQLPAANKES TKTKEIVKFS SYERLNVRVL  420
HVTGSSSSED ESMVVDLQVN MMGQISQVDV LIRLLEFLNQ DQHVNLVSMD ATNTNHAPGN  480
DLLHQITFRL RITQISEWDE EAFQEAVRRV VADLIQSQVD QNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333338ERRRRE
2334339RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.212170.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g039620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1385260.0AC138526.28 Medicago truncatula clone mth2-17n24, complete sequence.
GenBankAC1487750.0AC148775.2 Medicago truncatula chromosome 2 clone mth2-62i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631492.10.0putative transcription factor bHLH041 isoform X1
TrEMBLG7IIK80.0G7IIK8_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES654510.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-55bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]