PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g038580.1
Common NameMTR_2g038580, MTR_2g038625
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24770.9 Da    PI: 7.1674
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g038580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.7e-1883135456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + ++t+eq + Le++F++++++++++++ LA++l+L++rqV vWFqNrRa+ k
  Medtr2g038580.1  83 KLRLTTEQSNKLENAFKRHNTINTAQKRALAEELNLKQRQVEVWFQNRRARTK 135
                      5579***********************************************98 PP
2HD-ZIP_I/II106.52e-3482169290
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      kk+rl++eq++ LE+ F++++++++ +K +la+eL+l++rqv+vWFqnrRARtk+kq+E+++ +L++++++l+een rL+ke eeLr +
  Medtr2g038580.1  82 KKLRLTTEQSNKLENAFKRHNTINTAQKRALAEELNLKQRQVEVWFQNRRARTKLKQTEVNCIYLRKCHEKLSEENLRLKKELEELR-A 169
                      9*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-1773136IPR009057Homeodomain-like
SuperFamilySSF466893.42E-1775138IPR009057Homeodomain-like
PROSITE profilePS5007116.40677137IPR001356Homeobox domain
SMARTSM003898.6E-1579141IPR001356Homeobox domain
CDDcd000865.77E-1482138No hitNo description
PfamPF000465.6E-1583135IPR001356Homeobox domain
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
SMARTSM003403.5E-16137180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDDDQDHHMA STLDLNLKLG LGSYVQNNVN KPLVDSKEEL AIDLNHDRAN ELSLKRVHEE  60
QANTVEEEIA IDTTNDNNGC PKKLRLTTEQ SNKLENAFKR HNTINTAQKR ALAEELNLKQ  120
RQVEVWFQNR RARTKLKQTE VNCIYLRKCH EKLSEENLRL KKELEELRAL KVGPSNTTQS  180
SKAANWTICS SCKKIWKPNE EDVVIKSSHS TIELD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g038580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1867311e-178AC186731.2 Medicago truncatula chromosome 2 BAC clone mth2-84a4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595132.11e-156homeobox-leucine zipper protein HAT4
RefseqXP_013463424.11e-156homeobox-leucine zipper protein HAT4
SwissprotP466002e-41HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLG7IIE01e-155G7IIE0_MEDTR; Homeobox associated leucine zipper protein
STRINGAES653831e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.13e-30Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]