PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g038000.1
Common NameMTR_2g038000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-PHD
Protein Properties Length: 708aa    MW: 80309.8 Da    PI: 8.4653
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g038000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.24.2e-11485533553
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +f++e +e L ++F++n  p ++ +  L+k+lgL+ ++V  WF+N R+
  Medtr2g038000.1 485 FRFSHEAVEKLRQVFAENELPPKSVKDALSKELGLDAAKVNKWFKNARY 533
                      589********************************************97 PP
2PHD38.13.5e-13227282151
                      SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C+      +++++lCd +C+++fH+ Cl+++le+e++p +   w+C+ C++k
  Medtr2g038000.1 227 FCANCKIneVSPDNDIILCDgTCNRAFHQRCLDPPLETEDIPPEdqGWFCKYCDCK 282
                      699998865566********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.05E-14219284IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-12223282IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.807225282IPR019787Zinc finger, PHD-finger
SMARTSM002491.4E-9227280IPR001965Zinc finger, PHD-type
CDDcd155049.47E-30227279No hitNo description
PfamPF006283.7E-10227282IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590228279IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466898.98E-11475540IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-12475532IPR009057Homeodomain-like
PROSITE profilePS5007111.92478538IPR001356Homeobox domain
SMARTSM003895.6E-10480542IPR001356Homeobox domain
CDDcd000863.98E-8481542No hitNo description
PfamPF000461.6E-8485533IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MRDTERLNNQ GSTKPSNTKE HIKLKVDSPQ FKTSSTKHQR KKHRLKSKSH KLGGCTNASV  60
RTATDSSNKA STKDSSNKTD RNSTQVQPSK KIQGGKTSLN NDRKGEKDVV DQEGNIQKRK  120
RRRKKKRQRH NVDLDDTVRL QRRTRNILIR MKQEQNLIDA YAGEGWKGQS REKIRPEMEL  180
QRAKKQILKC KLSIRDAIHQ LDSLSSVGSI EGSVIATDGS VSHEHIFCAN CKINEVSPDN  240
DIILCDGTCN RAFHQRCLDP PLETEDIPPE DQGWFCKYCD CKIEILEATN AHLGTRFPLD  300
STWQDVFKEE AAIPDGDAAL LNQEEEWPSD DPEDDDYNPE RKEESHGGFN TEGNDKNASD  360
DSSSSSSMWS LNGECSLLDE GINLEYYSND HIDSDESGEI ACGRRQRRAV DYKKLYDEMF  420
GKDAPPCEQV SEDEDWGPRK RRRREKESEA VNTLMTLHES ENKYPNNKNN DRIRGNSSGI  480
KRPCFRFSHE AVEKLRQVFA ENELPPKSVK DALSKELGLD AAKVNKWFKN ARYMALKIRK  540
LQEGGQQLQS ITSKTSKDST SQHVQEDEVL NPKSAKITVI SSLKKCENVT GKEKTKASSN  600
PLKKKRPEIP PCLGENGNKD SMEVSDDVSL MKLLQDRKKK VSFAFEGDSE AAELEFERLS  660
KVKTKIDRLK QRLTGVQNCR SKGSDEVHLN EPSIMYVPIA ELREKVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122QKRKRRR
2117122KRKRRR
3118125RKRRRKKK
4118126RKRRRKKKR
5120126RRRKKKR
6121126RRKKKR
7123128KKKRQR
8438442RKRRR
9440445RRRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g038000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235470.0AC123547.15 Medicago truncatula clone mth2-26n6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595073.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-152PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLG7IG860.0G7IG86_MEDTR; Pathogenesis-related homeodomain-like protein, putative
STRINGAES653240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-147pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]