PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g035580.1
Common NameMTR_2g035580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18001.6 Da    PI: 8.6368
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g035580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.4e-141152344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     i ++ +r++tf kR++gi KK +E+ +LC+++++ ii+ +++
  Medtr2g035580.1 11 IADDLKRKTTFNKRKHGITKKINEITTLCGIDACGIIYDENN 52
                     8899*********************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.339152IPR002100Transcription factor, MADS-box
CDDcd002661.27E-21485No hitNo description
SuperFamilySSF554556.8E-19595IPR002100Transcription factor, MADS-box
PfamPF003191.4E-131152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MADKNMKVDY IADDLKRKTT FNKRKHGITK KINEITTLCG IDACGIIYDE NNDGATVYPS  60
KKGVQMVLDK FKSFPESEQR KGMLDHEGFL SQSIMKSKEK LKKLKGKSKK KKMNDLLGEF  120
IYTGEFDGNV SESDLEDLSS LIGDYRKEID ERIESSQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g035580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594864.11e-111agamous-like MADS-box protein AGL80
TrEMBLG7IND21e-110G7IND2_MEDTR; MADS-box transcription factor family protein
STRINGAES651151e-110(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3895922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-26M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]