PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g034650.1
Common NameMTR_2g034650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 915aa    MW: 103657 Da    PI: 7.0219
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g034650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1162.48e-51321473118
             CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                      + k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++np f r
  Medtr2g034650.1  32 EAKSRWLRPNEIHAILSNHKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVR 125
                      459******************************************************************************************* PP

             CG-1  97 rcywlLeeelekivlvhylevk 118
                      rcywlL+++le+ivlvhy+e++
  Medtr2g034650.1 126 RCYWLLDKSLEHIVLVHYRETQ 147
                      *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.49226152IPR005559CG-1 DNA-binding domain
SMARTSM010766.3E-7329147IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4532145IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.0E-4348448IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.26E-14360446IPR014756Immunoglobulin E-set
SuperFamilySSF484034.35E-19530657IPR020683Ankyrin repeat-containing domain
CDDcd002045.99E-16531654No hitNo description
Gene3DG3DSA:1.25.40.201.0E-16531657IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-8537624IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.228562627IPR020683Ankyrin repeat-containing domain
SMARTSM002481.2E-5595624IPR002110Ankyrin repeat
PROSITE profilePS5008811.301595627IPR002110Ankyrin repeat
SMARTSM002482100634665IPR002110Ankyrin repeat
SMARTSM0001575705727IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.888706735IPR000048IQ motif, EF-hand binding site
SMARTSM0001541739761IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.309759785IPR000048IQ motif, EF-hand binding site
PfamPF006120.22761779IPR000048IQ motif, EF-hand binding site
SMARTSM000150.021781803IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.237782806IPR000048IQ motif, EF-hand binding site
PfamPF006120.0056783803IPR000048IQ motif, EF-hand binding site
SMARTSM0001533861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.675863891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MAQNNLTGQL VGSEIHGFHT LRDLDVGETL EEAKSRWLRP NEIHAILSNH KYFTIHVKPL  60
NLPKSGTVVL FDRKMLRNFR KDGHNWKKKN DGKTVKEAHE HLKVGNEERI HVYYAHGQDN  120
PGFVRRCYWL LDKSLEHIVL VHYRETQESQ SSPVTPLNSN SSPISDPTTP WILSEDLDSG  180
TSSGYTNGLN GNLTVRSHEQ KLHELNTLDW DELVASNANT PTIKNGGNEP RYYQLNQSLP  240
NGSFDNVAGN PSSEIPSYGI LTPPESGSSN VSYCFPESVN DQKNHSMNFG GVDSVDTLVN  300
EGLQSQNSFG TWMNNAISYT PCSVEASTLE SSMPSSVTDP FSSVVMDNQQ SSLPEQVFHI  360
TEVAPSWVSS TEKTKVLVTG YFLFDYQYLA KSNIMCVCGE TSVPVEIVQV GVYRCWVLPH  420
SPGFVNLYLS FDGHKPISQV VNFEYRTPIL HDPAASMEET YNWVEFRLQM RLSHLLFTTP  480
KTLDVFSSEV SPTSLKETKK FASKTLFLSK SFLHFMKSSD ANAPPFPQAK NTLFEIALKN  540
KLREWLLERI VLGCKTTEYD PQGQSVIHLC AMLGYTWAIT LFSWSGLSLD FRDKFGWTAL  600
HWAAYNGMEK MVATLLSSGA KPNLVTDPTP ENPGGCTAAD LAYMKGYDGL AAYLSEKSLV  660
EQFNDMSLAG NISGSLQTTT TDPVNAENLT EDQVYLKDTL AAYRTTAEAA ARIQAAFREH  720
SLKLRYQSVQ FISPEEEARQ IVAAMKIQHA FRNFETRKAM AAAARIQYRF RSWKLRREFL  780
HMRRQAIRIQ AAFRGFQVRR QYRKILWSVG ILEKVILRWL LKRKGFRGLE VNPDEDMKDE  840
KQESDVEEDF FKTGRKQAEE RVERSVVRVQ AMFRSKKAQQ EYSRMKMAHS QAQLELELEE  900
LINSDVDMLT TKTS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g034650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267780.0AC126778.9 Medicago truncatula clone mth2-32j21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594790.30.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A396JD540.0A0A396JD54_MEDTR; Putative transcription factor CG1-CAMTA family
STRINGAES650410.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]