PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g033820.1
Common NameMTR_2g033820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 381aa    MW: 41950.7 Da    PI: 6.8877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g033820.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28.1e-34202260159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers++d ++v++tYeg+H+h+
  Medtr2g033820.1 202 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTASCGVKKRVERSSDDSSIVVTTYEGQHTHP 260
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-35187262IPR003657WRKY domain
SuperFamilySSF1182901.11E-29194262IPR003657WRKY domain
PROSITE profilePS5081131.996197262IPR003657WRKY domain
SMARTSM007742.7E-40202261IPR003657WRKY domain
PfamPF031063.4E-27203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEEEKREEHT NPTNSSSTTT TTTTMAFSDE IPTTTTTINN NNTSLFPFQP SISTFFDTIP  60
SSSCDQKSSS FGFMDLLGSH DYINNNNNTF LLSDWVPTVA TTTTTHHTLP SPGSSNIPDS  120
SEVFNTPVSP NSSSISSSSN EATVNNTLEQ HRSKLSKIEA ELEGDDQDQD KTKKQLKPKK  180
KNQKKEREPR FAFMTKSEVD HLDDGYRWRK YGQKAVKNSP FPRSYYRCTT ASCGVKKRVE  240
RSSDDSSIVV TTYEGQHTHP SPATSRPNLS FVHQPTSFGA ASGSHSHFLL PTLLYNNHNS  300
TSNNNITTTT TPPSSNYVGG SGGSCVNTSS FGGFANDQVI NHRGFGSSGF VNEALLRDNG  360
LLQDIIQMKK EEKDSRKEQH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-261952631078Probable WRKY transcription factor 4
2lex_A3e-261952631078Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.193250.0glandular trichome| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g033820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1359130.0BT135913.1 Medicago truncatula clone JCVI-FLMt-13I16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594714.20.0probable WRKY transcription factor 48
TrEMBLG7IMS40.0G7IMS4_MEDTR; Putative transcription factor WRKY family
STRINGAES649650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.18e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]