PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030660.1
Common NameMTR_2g030660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 655aa    MW: 74364.9 Da    PI: 6.7955
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.2e-162171656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++++q+  Lee F+   +p+ +++ e+A++l+L+ +qVk WFqN+Ra  k
  Medtr2g030660.1 21 RHSADQILKLEEIFKTLTHPDDNQKYEIAQQLELEPQQVKWWFQNKRAHIK 71
                     6799********************************************877 PP
2START110.52.7e-351813966205
                      HHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
            START   6 aaqelvkkalaeepgWvkss......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                      aa+e+++k   +e +Wvks        ++n+++v  +++  ++   ++e +++s ++   ++ lve +ld+  +W + ++    kaet++v++ 
  Medtr2g030660.1 181 AATEELLKLFRDESLWVKSQlnrrlvLEKNYEDVFPRVDHFNGakTHVESSKDSQMLKIGATHLVEMFLDSE-KWANLFPtivnKAETIKVLER 273
                      78899999999*********88888877788888777755444999****************9*********.99999999999********** PP

                      T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
            START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                      +      gal lm  e+ +lsplv  R f+f+Ry+ q +ag wvi+dvS d  ++   +ss+ R   +pSg++i++ sn  skv w+ehv+++ 
  Medtr2g030660.1 274 DssqnqsGALLLMHGEMHVLSPLVKpRQFYFLRYCVQVEAGIWVIADVSYDYLKEDGPHSSFWR---FPSGCMIQQISNETSKVSWIEHVEVDL 364
                      **********************9866***********************9987665449*****...*************************** PP

                      SXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
            START 175 rlp.hwllrslvksglaegaktwvatlqrqce 205
                      ++  h+++r +v++ +a+ga +w+  l+r +e
  Medtr2g030660.1 365 KIQtHSMYRDIVNNAIAFGAERWLMELRRIGE 396
                      9999********************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.34E-15976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-161075IPR009057Homeodomain-like
PROSITE profilePS5007114.7711373IPR001356Homeobox domain
SMARTSM003897.1E-121577IPR001356Homeobox domain
CDDcd000861.29E-111774No hitNo description
PfamPF000461.1E-132171IPR001356Homeobox domain
PROSITE profilePS5084829.823167400IPR002913START domain
SMARTSM002342.4E-20176397IPR002913START domain
CDDcd088757.63E-79176393No hitNo description
SuperFamilySSF559618.63E-25179398No hitNo description
PfamPF018525.7E-28180396IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-8224382IPR023393START-like domain
SuperFamilySSF559617.33E-13416621No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MDLSGDEEDS DNSNESKRVC RHSADQILKL EEIFKTLTHP DDNQKYEIAQ QLELEPQQVK  60
WWFQNKRAHI KNKNLKPAND ALRAENERIL KENMEMKERL KNLLCQSSCN GSNSLKQLQV  120
ENARLKERYE MMQKKEVSLE LKLGLPKSST RGSTSLNLDR GSSSKSSLEI QNPMMLVAGL  180
AATEELLKLF RDESLWVKSQ LNRRLVLEKN YEDVFPRVDH FNGAKTHVES SKDSQMLKIG  240
ATHLVEMFLD SEKWANLFPT IVNKAETIKV LERDSSQNQS GALLLMHGEM HVLSPLVKPR  300
QFYFLRYCVQ VEAGIWVIAD VSYDYLKEDG PHSSFWRFPS GCMIQQISNE TSKVSWIEHV  360
EVDLKIQTHS MYRDIVNNAI AFGAERWLME LRRIGERCGS AALEYMHFYD NGVITLPEGK  420
RCVMKLAHQV LKEFSKNLTM SSKSDLPQYI ADTDDSGVRF SIRKNRNLFL SNDPFIVIVA  480
SSVSLPLPSH TVFDFLRDPA RRFEWDKFCD GNPWHEIAHI STGTHPNHYV SIIQPLVSPP  540
KDGVKIIQEC FIDPLGSYVV YSPLNTQELN MAINGHDLSN VSLIIPSGFL ISEDSKSLSK  600
DSKSRGSLLT VAFQMHMPAP LITNFESAAD ASNALMTTVV QSIKHALLSG SELK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g030660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470100.0AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632692.10.0homeobox-leucine zipper protein HDG8
TrEMBLG7IKY60.0G7IKY6_MEDTR; Homeobox leucine zipper family protein, putative
STRINGAES648170.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.11e-123homeodomain GLABROUS 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]