PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g030600.1 | ||||||||
Common Name | MTR_2g030600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 693aa MW: 77727.8 Da PI: 6.9118 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.2 | 9.3e-16 | 29 | 80 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+ q+ +L+++ +++++p++++r +LA k+gL+ +q+k WFqN+Ra k Medtr2g030600.1 29 KRLTSAQTSILKNFMKECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLK 80 5689********************************************9766 PP | |||||||
2 | START | 118.3 | 1e-37 | 213 | 435 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 +a++elv+++ ++ep+Wvk s + ++ + q f++++ e ++ sg+v +lv +ld +W++ ++ kaet+ Medtr2g030600.1 213 VDAAMDELVRLVRVDEPFWVKPSntqdgYTLHRENYEQVFPKNNHfkgayVCEESSKYSGLVKISGIELVGMFLDLV-KWTNLFPtivtKAETI 305 6789******************96655533444444444444433787875568899**********9******999.99999999999***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 +v + g gal lm+ e+ lsplv R+f ++Ry+++ g+wvi dvS ds ++++ +++ R+ ++pSg++i++++ g++ vtwveh Medtr2g030600.1 306 KVFEIGsrgsrdGALLLMNEEMHILSPLVRpREFNIIRYCKKVDPGVWVITDVSFDSSRPNT--APLSRGWKHPSGCIIREMPHGGCLVTWVEH 397 ***999999******************9866****************************986..7***************************** PP EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 v++++++ h+++r lv+ ga w + lqr ce+ Medtr2g030600.1 398 VEVEDKIHtHYVYRDLVGEYNLYGAESWIKELQRMCER 435 ******999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.204 | 22 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.43E-16 | 24 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-15 | 24 | 86 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.4E-13 | 29 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.29E-15 | 30 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-15 | 30 | 87 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 35.385 | 202 | 438 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.5E-30 | 202 | 435 | No hit | No description |
CDD | cd08875 | 1.15E-79 | 206 | 434 | No hit | No description |
SMART | SM00234 | 5.1E-25 | 211 | 435 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 6.5E-10 | 211 | 403 | IPR023393 | START-like domain |
Pfam | PF01852 | 2.1E-31 | 213 | 435 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.44E-9 | 458 | 605 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MDYSIGGGSE SGEEVNGNFR DDGKKPSHKR LTSAQTSILK NFMKECHHPD EAQRCQLAVK 60 IGLEPKQIKS WFQNKRAMLK HQHERETNGT LRRENDKIRN ENLKIKEELK AKICLDCGGS 120 PFPMKDHQNF VQEMKQENAQ LKQEAMSSLL ASYMEKKISR PEFEQALKSI KSFPRDYECS 180 SHMQGNLVMW GGVLGQTSTQ NYDAQKITMS QVVDAAMDEL VRLVRVDEPF WVKPSNTQDG 240 YTLHRENYEQ VFPKNNHFKG AYVCEESSKY SGLVKISGIE LVGMFLDLVK WTNLFPTIVT 300 KAETIKVFEI GSRGSRDGAL LLMNEEMHIL SPLVRPREFN IIRYCKKVDP GVWVITDVSF 360 DSSRPNTAPL SRGWKHPSGC IIREMPHGGC LVTWVEHVEV EDKIHTHYVY RDLVGEYNLY 420 GAESWIKELQ RMCERSLGSN VEAIPVEETI GVIQTLEGRN SVIKLADRMV KMFCECLTMP 480 GQVELNHLTL DSIGGVRVSI RATTDDDASQ PNGTVVTAAT TLWLPLPAQK VFEFLKDPTK 540 RSQWNGLSCG NPMHEIAHIS NGPYHGNCIS VIKSFIPTQR QMVILQESFT SSVGSYVIYA 600 PIDRKTMDVA LRGEDSKELP ILPYGLIVCS KNQANLNAPF GASKSIEDGS LITLAAQTYA 660 IGQVLNVDSL NDINSQLAST ILNVKDALMS SI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10893 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g030600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147010 | 0.0 | AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632687.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | G7IKY1 | 0.0 | G7IKY1_MEDTR; Homeobox leucine zipper protein, putative | ||||
STRING | AES64812 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-154 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g030600.1 |
Entrez Gene | 11407638 |
Publications ? help Back to Top | |||
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