PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g027800.2 | ||||||||
Common Name | MTR_2g027800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 300aa MW: 32903.6 Da PI: 7.1098 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.1e-33 | 39 | 93 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Medtr2g027800.2 39 KPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 93 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-32 | 36 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-24 | 39 | 93 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 9.68E-17 | 39 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 41 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-15 | 123 | 168 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MFPRLIHPHD GIVVGQDDLQ GGVSNHKGDP CLVLTADPKP RLRWTQDLHE RFVDAVTQLG 60 GPSKATPKAI MRTMNVKGLT LFHLKSHLQK YRLGMTGSYL LESPGTENPS PKLPTSDTNE 120 GYEIKEALRA QMEVQSKLHL QVEAEKHLQI RQDAERRYMA MLERACKMLA DQFIGATVID 180 TDSQKFQGIE NKAPRGPLVD HLGFYSLPST EAAGVNVPEE EVPQTIPPQR ADCSTESCLT 240 SHESSGGLTL EGSQVGGKRR MLGMDSMAAP LIWSEAKMKT QAINLGQGNH PLGISRYGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-18 | 39 | 92 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-18 | 39 | 92 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-18 | 39 | 92 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-18 | 39 | 92 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11460 | 0.0 | root| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g027800.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139793 | 0.0 | BT139793.1 Medicago truncatula clone JCVI-FLMt-13F21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003594368.1 | 0.0 | protein PHR1-LIKE 2 isoform X2 | ||||
Swissprot | Q94A57 | 5e-57 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | G7ISN7 | 0.0 | G7ISN7_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES64618 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 2e-59 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g027800.2 |
Entrez Gene | 11407502 |
Publications ? help Back to Top | |||
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