PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g027800.1 | ||||||||
Common Name | MTR_2g027800, MtrDRAFT_AC161399g17v2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 314aa MW: 34307.1 Da PI: 7.1017 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.8 | 1.2e-33 | 39 | 93 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Medtr2g027800.1 39 KPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 93 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-32 | 36 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.341 | 36 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-16 | 39 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-24 | 39 | 94 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 41 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-15 | 137 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MFPRLIHPHD GIVVGQDDLQ GGVSNHKGDP CLVLTADPKP RLRWTQDLHE RFVDAVTQLG 60 GPSKATPKAI MRTMNVKGLT LFHLKSHLQK YRLGKQSGKD IGEGCKDGMT GSYLLESPGT 120 ENPSPKLPTS DTNEGYEIKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER RYMAMLERAC 180 KMLADQFIGA TVIDTDSQKF QGIENKAPRG PLVDHLGFYS LPSTEAAGVN VPEEEVPQTI 240 PPQRADCSTE SCLTSHESSG GLTLEGSQVG GKRRMLGMDS MAAPLIWSEA KMKTQAINLG 300 QGNHPLGISR YGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11460 | 0.0 | root| seed| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g027800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139793 | 0.0 | BT139793.1 Medicago truncatula clone JCVI-FLMt-13F21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003594367.1 | 0.0 | protein PHR1-LIKE 2 isoform X1 | ||||
Refseq | XP_024631419.1 | 0.0 | protein PHR1-LIKE 2 isoform X1 | ||||
TrEMBL | A2Q5E6 | 0.0 | A2Q5E6_MEDTR; Homeodomain-related | ||||
STRING | AES64618 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 4e-66 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g027800.1 |
Entrez Gene | 11407502 |
Publications ? help Back to Top | |||
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