PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g026250.1
Common NameMTR_2g026250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 599aa    MW: 67703.5 Da    PI: 5.3068
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g026250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.82.2e-1212255961374
             GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      l+e L++cA++v +gd+++a  ++++ l +++s +g+p+qRl ay++e+L+ar+ +s+s +ykal+++e +   s+e ++a++++++++P+++f
  Medtr2g026250.1 225 LKEELIRCAQFVFDGDFQKAIGFMNKvLGKMVSVAGSPIQRLGAYMLEGLRARVESSGSAIYKALKCEEPT---SIELMSAMHILYQICPYFQF 315
                      5789******************997626888***************************************9...9******************* PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +++  N  I e++++e+r+HiiDf+i qG QW+ Ll+aL  +p+gpp +R+Tg+++++s+  +  +l  +g++L++ A++++vpfefn  v   
  Medtr2g026250.1 316 AYISSNAVICEEMQNESRIHIIDFQIAQGSQWMLLLHALKHKPGGPPFIRVTGIDDSQSFhaRGGKLDIVGKKLEDCAKTCKVPFEFNS-VKMY 408
                      ********************************************************9999889999***********************.6778 PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        +++le+++v+++E+l+Vn+ ++lh+++desvs+e++rd++L+lvk lsPkvv +veqe+++n+++Fl rf+e+l+yy+a+f+s+++ lpr++
  Medtr2g026250.1 409 GCEVQLEDFEVQHDEVLVVNFPFALHHIPDESVSMENHRDRLLRLVKILSPKVVLFVEQESNTNTSPFLPRFAETLNYYTAMFESIDVALPRDD 502
                      999******************************************************************************************* PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++ri+ E+++++r+ivn++aceg+er+erhe ++kW++r+++aGF p+ ls ++ +++++ll+ +++d yr+e+ + ++ l Wk++ + + SaW
  Medtr2g026250.1 503 KKRINAEQHCVARDIVNIIACEGDERFERHELFGKWKARFSMAGFVPLLLSPSVIDSVRTLLKDFNKD-YRIEQTDVAINLAWKSKVMCTSSAW 595
                      ******************************************************************77.************************* PP

             GRAS 374 r 374
                      r
  Medtr2g026250.1 596 R 596
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.941199577IPR005202Transcription factor GRAS
PfamPF035147.7E-119225596IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MYTSRKKPNS AGIQLYYQQQ SLRQIDSNKN RFKTLQTNSN NGGRRQRTNV SLETSNWESN  60
WEKQFCTLES SQVANDVIAF DSPSSASGDP FNMRSTFSPQ ISRYCSSDNT TNVSPLGVYS  120
SADDDSFEFK MKEIELSLVG TDIEVFGSCL SNSNGSLHQG TSQDNEFHID EMISEQGFKE  180
SEISLLGPSS DIVDSCQSNL NGSLHQGTSQ YDWSQFEEII PKLDLKEELI RCAQFVFDGD  240
FQKAIGFMNK VLGKMVSVAG SPIQRLGAYM LEGLRARVES SGSAIYKALK CEEPTSIELM  300
SAMHILYQIC PYFQFAYISS NAVICEEMQN ESRIHIIDFQ IAQGSQWMLL LHALKHKPGG  360
PPFIRVTGID DSQSFHARGG KLDIVGKKLE DCAKTCKVPF EFNSVKMYGC EVQLEDFEVQ  420
HDEVLVVNFP FALHHIPDES VSMENHRDRL LRLVKILSPK VVLFVEQESN TNTSPFLPRF  480
AETLNYYTAM FESIDVALPR DDKKRINAEQ HCVARDIVNI IACEGDERFE RHELFGKWKA  540
RFSMAGFVPL LLSPSVIDSV RTLLKDFNKD YRIEQTDVAI NLAWKSKVMC TSSAWRCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-5225959636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g026250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1485260.0AC148526.24 Medicago truncatula clone mth2-53k6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594263.10.0scarecrow-like protein 21
TrEMBLG7IPA40.0G7IPA4_MEDTR; GRAS family transcription factor
STRINGAES645140.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-178SCARECROW-like 13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]