PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g024390.1 | ||||||||
Common Name | KNOX1, MTR_2g024390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 375aa MW: 42139.2 Da PI: 6.6705 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 300 | 336 | 19 | 55 |
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ Medtr2g024390.1 300 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 336 45679*****************************885 PP | |||||||
2 | ELK | 41.1 | 3.8e-14 | 256 | 277 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Medtr2g024390.1 256 ELKGQLLRKYSGYLGSLKQEFM 277 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.3E-17 | 115 | 159 | IPR005540 | KNOX1 |
Pfam | PF03790 | 8.0E-21 | 117 | 155 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.1E-24 | 166 | 217 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.8E-20 | 170 | 216 | IPR005541 | KNOX2 |
Pfam | PF03789 | 6.2E-11 | 256 | 277 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-8 | 256 | 277 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 256 | 276 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.086 | 276 | 339 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-19 | 278 | 354 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-12 | 278 | 343 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-28 | 281 | 341 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.24E-12 | 288 | 340 | No hit | No description |
Pfam | PF05920 | 6.8E-17 | 296 | 335 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 314 | 337 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MEGSSNGSCS YVMGAFGENS GGLCPPMMMM PLVTSSHHNA HHPINSNNNN TNANNTTGLF 60 LPIPNSTNNN NNHYTNCNNN TSSIMLQNNH QNTPGLGYYF MDNINNHGSS SSSSSSVKSK 120 IMAHPHYHRL LEAYINCQKV GAPSEVVARL EEACATAVRM GGDAVGSGCL GEDPALDQFM 180 EAYCEMLIKY EQELSKPLKE AMLFLQRIEV QFKNLTVSSS SDNIACSEGG DRNGSSEEDH 240 VDLYNNMIDP QAEDRELKGQ LLRKYSGYLG SLKQEFMKKR KKGKLPKEAR QQLLEWWSRH 300 YKWPYPSESQ KLALAESTGL DQKQINNWFI NQRKRHWKPS EDMQFVVMDP SHPHYYMDNV 360 LTNSYPMDLS NTML* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 271 | 280 | LKQEFMKKRK |
2 | 277 | 281 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.121 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g024390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF128056 | 0.0 | EF128056.1 Medicago truncatula class I KNOX homeobox transcription factor (KNOX1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462900.1 | 0.0 | homeobox protein SBH1 | ||||
Swissprot | P46608 | 1e-170 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A5Y4G6 | 0.0 | A5Y4G6_MEDTR; Class I KNOX homeobox transcription factor | ||||
STRING | XP_004486190.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-131 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g024390.1 |
Entrez Gene | 25486232 |
Publications ? help Back to Top | |||
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