PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g023340.1 | ||||||||
Common Name | MTR_2g023340, NF-YC10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YC | ||||||||
Protein Properties | Length: 245aa MW: 27698.5 Da PI: 7.7602 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 144.2 | 3e-45 | 64 | 165 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l +fw+kq +ek+ df+n+ lPlarikki+ka+e v+misaeaP+l++kace+fi+el+ rsw +ae nkr+tl+ksdia+av++ ++fdfl Medtr2g023340.1 64 LGTFWAKQneeVEKVVDFRNNGLPLARIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATRSWANAEVNKRKTLQKSDIASAVSSNEVFDFL 157 678**9998889999******************************************************************************* PP NF-YC 93 vdivprde 100 vdivpr++ Medtr2g023340.1 158 VDIVPREN 165 ******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.74E-28 | 55 | 157 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.1E-34 | 86 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-20 | 86 | 148 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDQKTQVKPE ERRNDTQTQN QIVSVSRPLF HTANASAFSS YMSRVQVQEI SHQQQKQQEL 60 QKKLGTFWAK QNEEVEKVVD FRNNGLPLAR IKKIMKAEEG VSMISAEAPI LFAKACEMFI 120 MELATRSWAN AEVNKRKTLQ KSDIASAVSS NEVFDFLVDI VPRENTMERD IFMGIPRREN 180 VPYYLPMPVH VPPQYAAGPS YGPAGMLMGR HLPNQPPSHP FANQIFPTPK KESDHSTDLP 240 NSDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-42 | 71 | 163 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g023340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918302 | 0.0 | JQ918302.1 Medicago truncatula nuclear transcription factor Y subunit C10 (NF-YC10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462829.1 | 0.0 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q9SMP0 | 1e-50 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | I3TAY7 | 0.0 | I3TAY7_MEDTR; Core histone H2A/H2B/H3/H4 | ||||
STRING | XP_004486310.1 | 2e-57 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 6e-53 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g023340.1 |
Entrez Gene | 25486164 |
Publications ? help Back to Top | |||
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