PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g020620.2 | ||||||||
Common Name | MTR_2g020620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SBP | ||||||||
Protein Properties | Length: 642aa MW: 72315.9 Da PI: 6.1642 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 53.1 | 8.5e-17 | 25 | 61 | 41 | 77 |
EE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 fC +C rfh ls+fDe+krsCrr+L++hn rrr+k+ Medtr2g020620.2 25 GFCWRCCRFHVLSDFDEGKRSCRRKLERHNTRRRRKA 61 6*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.144 | 1 | 60 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.29E-14 | 21 | 64 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-10 | 22 | 60 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-6 | 26 | 47 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MLIVMIFAIE VDYCEFYDDD DVDWGFCWRC CRFHVLSDFD EGKRSCRRKL ERHNTRRRRK 60 AVDSAVGVDN EVQTVTQNDD SNCDGELGID YSNLSRENIE KRALQDHEEE PVVNGSSTPE 120 TQNINGDSVV SFVASAETQA NIGKDVSDPS KSPSYCDNKS DYSSMCQTGR VSFKLYDWNP 180 AEFPRRLRLQ IFQWLASMPV ELEGYIRPGC TILTIFIAMP NIMWINLLKD PMYYVRDLAA 240 PRNMLSGRGT ALIHLNDMIF RVMKDGISVT KVEVNMQAPR LHYIHPTCFE AGKPMEFFAC 300 GSNLLQPKFR LLVSFYGKYL KCEYCAPSPH NSAEDNISCA FDNQLYKICV PHIEENLLGP 360 AFIEVENESG LSNFIPVLIG DKEICTELKI LQQKLDASLL SKQFRSASGS SICSSCEAFV 420 HIHTSSSDLL VDIAWLLKDP TSENFDRMVS ASQIQRYCYL LDFLICNDST IILGKILPNL 480 ISITKSMKSN ISDVDMDQLL KGMCNARDAI CRKGGGIVLN SKMEGFKPAQ CSSQNAKLSV 540 VEVNSQGIQF RADAELGVLS SLASDEKNQK IPLLKRDIIM NMEELPKRCD HQNLTRGFLR 600 SRPTTFVLVS LVVCLAVCVS VFHHGRVNEL AVSIRRCLFN H* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 58 | RRKLERHNTRRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8381 | 0.0 | leaf| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g020620.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151914 | 0.0 | AC151914.19 Medicago truncatula clone mth2-29f16, complete sequence. | |||
GenBank | AC164395 | 0.0 | AC164395.7 Medicago truncatula clone mth2-69h11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462681.2 | 0.0 | LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A072VEX5 | 0.0 | A0A072VEX5_MEDTR; Squamosa promoter-binding-like protein | ||||
STRING | AES64286 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 1e-163 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g020620.2 |
Entrez Gene | 11437830 |
Publications ? help Back to Top | |||
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