PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g019750.1 | ||||||||
Common Name | MTR_2g019750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 33328.1 Da PI: 5.4956 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.3 | 1.4e-16 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdp + + r++lg+f+ta+eAa a+++a+++++g Medtr2g019750.1 49 KFLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAQEAAFAYDRAALSIKG 98 678******.**********843...4***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-27 | 49 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.639 | 49 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.31E-29 | 49 | 105 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-20 | 49 | 106 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-32 | 49 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 50 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-9 | 51 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MSTSRTSNTS LKGHDHHHNQ IQINLSLLQR NTSVCGEKRG RKKQAEPGKF LGVRRRPWGR 60 YAAEIRDPAT KERHWLGTFD TAQEAAFAYD RAALSIKGSN ARTNFIYPSS SSDEDDTNFH 120 NVVDPPFDVQ RTQPITNQNT LSQLDSNSHL NNDNLLFSND YNNSGYLESI VPVNCFKPIS 180 NTNNSNFDDH SSNASDSSEH QNVVDSICTT NFMHGQSFFD YTPFSQEAYN INTSNYSEGL 240 WDCNYNELSA IFNQPPRSEI PSYGLMTTQD VSSTTYSSHS YSPFGDVDMG MGYSLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 40 | 105 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g019750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC186295 | 0.0 | AC186295.3 Medicago truncatula chromosome 2 BAC clone mth2-26g6, complete sequence. | |||
GenBank | AC205391 | 0.0 | AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593957.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | G7IPZ0 | 0.0 | G7IPZ0_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES64208 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5784 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 3e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g019750.1 |
Entrez Gene | 11443354 |
Publications ? help Back to Top | |||
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