PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g019740.1
Common NameMTR_2g019740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 483aa    MW: 50982.9 Da    PI: 8.2741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g019740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.8e-124974227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C +++rtG+C +G+rC+F+H++
  Medtr2g019740.1 49 DEVDCTYYLRTGFCGFGSRCRFNHPR 74
                     6789********************96 PP
2zf-CCCH34.82.8e-1196120327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++++rt  Ck+G++Ck++H++
  Medtr2g019740.1  96 QPVCQYYMRTRSCKFGASCKYHHPK 120
                      689********************96 PP
3zf-CCCH36.48.9e-12142166226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++f +tG+Ck+G++CkF H+
  Medtr2g019740.1 142 GEKECSYFVKTGQCKFGATCKFDHP 166
                      7899********************9 PP
4zf-CCCH34.92.6e-11355378326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       +lC ++a+ G+Ck+G+ CkF H+
  Medtr2g019740.1 355 AALCTHYAQRGICKFGPACKFDHP 378
                      589********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6524775IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-54774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-64976IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-94974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.37193121IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-493120IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-996120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-596120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-498119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737140168IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6140167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5142168IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4146165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802352380IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6352379IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9355378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5355381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5357377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDHFPRSTQP DPSSQWTGPD SQTGLEEPMW QLGLGSGGSG EDSYPQRPDE VDCTYYLRTG  60
FCGFGSRCRF NHPRDRAAVI GAASRTVGEY PERVGQPVCQ YYMRTRSCKF GASCKYHHPK  120
QTGATDASPV SLNYYGYPLR PGEKECSYFV KTGQCKFGAT CKFDHPVPAS VQIPAPSPVP  180
PVSSLHVPVP SPLYPTVQTP SGPSSQQIGV LVARPPLLHG SFVQSPYGPM VLSPTMVPFS  240
GWGPYQATAT SPVLPSGSPA NVGSTQLYGI TQLPSPGNAY TGPYQLSGSS VGPSSRNQNE  300
QSFPASPNQP EYHYYSKPEE LPFAPSYRYH KPPDMSAPKV NAVLSPAGLP LRPGAALCTH  360
YAQRGICKFG PACKFDHPIA PLSYSPSASS LTDVPVAPYF VGSSIGTLVP SSSSPELQPE  420
LTAGSSRESV PSRISSSVST STGSVGLTLP TGGPVSQSST RSSSPLAPAN TTTSSNVSHP  480
SN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.106860.0glandular trichome| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g019740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1862950.0AC186295.3 Medicago truncatula chromosome 2 BAC clone mth2-26g6, complete sequence.
GenBankAC2053910.0AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593956.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-138C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLG7IPY90.0G7IPY9_MEDTR; Putative transcription factor C3H family
STRINGAES642070.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-125C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]