PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g016220.4 | ||||||||
Common Name | MTR_2g016220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 379aa MW: 43927.8 Da PI: 7.4356 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.9 | 4e-27 | 90 | 147 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYRl 55 prlrWtpeLH++F++ave+LGG e+AtPk +l+lm+v gL + hvkSHLQ +YR+ Medtr2g016220.4 90 PRLRWTPELHHSFLHAVERLGGLERATPKLVLQLMSVRGLNIGHVKSHLQfsfqMYRS 147 8************************************************633337775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 86 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-12 | 88 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-19 | 90 | 143 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MSEEGHEIHN NYIQSEDLQL VEESDNSSGS SKKWSSFDLN EEATSEDNNH EATLEENENE 60 KENIEGNSRS REGNNERRGK VRHYVRSKMP RLRWTPELHH SFLHAVERLG GLERATPKLV 120 LQLMSVRGLN IGHVKSHLQF SFQMYRSKKL DEFGQVLCQT QRSTQEVGRS QKLDLSQHFK 180 MGNGGIILSS SYNEQHHNPQ YFPTLLKPCP SFSLSRNYSH TNSSHHDDSR HQHWHFNHQP 240 FKFAPVTPTQ FLEEKNWSPF EIMNNIHQPE FKRLLSNVTS KTWSKPIEKV EWNNTSSSIT 300 NNTEYLLKSK EPCTSSTSLL LQFEAPFRIK LNQEKVHKDE KRLLPDLQLG LSHIYGNNDG 360 KIDHCRETKE ISTKLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-15 | 91 | 139 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g016220.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462569.1 | 0.0 | transcription factor LUX isoform X1 | ||||
Refseq | XP_024631504.1 | 0.0 | transcription factor LUX isoform X1 | ||||
TrEMBL | A0A072VEK0 | 0.0 | A0A072VEK0_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AES83941 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-30 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g016220.4 |
Entrez Gene | 25485972 |
Publications ? help Back to Top | |||
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