PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g016220.2 | ||||||||
Common Name | MTR_2g016220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 375aa MW: 43418.3 Da PI: 7.4356 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.6 | 7.6e-30 | 90 | 143 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++ave+LGG e+AtPk +l+lm+v gL + hvkSHLQ+YR+ Medtr2g016220.2 90 PRLRWTPELHHSFLHAVERLGGLERATPKLVLQLMSVRGLNIGHVKSHLQMYRS 143 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 86 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.051 | 86 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.76E-14 | 88 | 144 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-21 | 90 | 145 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-7 | 91 | 142 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSEEGHEIHN NYIQSEDLQL VEESDNSSGS SKKWSSFDLN EEATSEDNNH EATLEENENE 60 KENIEGNSRS REGNNERRGK VRHYVRSKMP RLRWTPELHH SFLHAVERLG GLERATPKLV 120 LQLMSVRGLN IGHVKSHLQM YRSKKLDEFG QVLCQTQRST QEVGRSQKLD LSQHFKMGNG 180 GIILSSSYNE QHHNPQYFPT LLKPCPSFSL SRNYSHTNSS HHDDSRHQHW HFNHQPFKFA 240 PVTPTQFLEE KNWSPFEIMN NIHQPEFKRL LSNVTSKTWS KPIEKVEWNN TSSSITNNTE 300 YLLKSKEPCT SSTSLLLQFE APFRIKLNQE KVHKDEKRLL PDLQLGLSHI YGNNDGKIDH 360 CRETKEISTK LSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-17 | 91 | 145 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g016220.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024631505.1 | 0.0 | transcription factor LUX isoform X2 | ||||
TrEMBL | A0A072V3K0 | 0.0 | A0A072V3K0_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AES83941 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g016220.2 |
Entrez Gene | 25485972 |
Publications ? help Back to Top | |||
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