PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g016140.1
Common NameMTR_2g016140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 333aa    MW: 37437.8 Da    PI: 5.2225
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g016140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.83.3e-1422112186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+++   +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++  + +   +s++p+f++l+
  Medtr2g016140.1  22 CWSEDASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLHSNWPFFERLD 112
                      7****************************************99999*************************99998777778******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2420113No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MPDFHHDSLT PPSRTVPVRE DCWSEDASST LVDAWGRRYL ELNRGNLRQK DWQDVADAVN  60
ALHGHTKKTH RTDVQCKNRI DTIKKKYKVE KARVTESNGV LHSNWPFFER LDVLIGPNFS  120
SKKLSISSPG AVTPSPPVAL PLIPHRKFAN SGGYSSPAIA VHSTAVALPQ KRNYSAVAAA  180
TVNVMDDGYF RRNYSAVAAA AAAAEADEDD DEDDEVEEVE EEDVEVEEEE GRRSEVDEGD  240
KGREGMKRLA KAIESFGEMY ERVEEQKLRQ MVDLEKQRMQ FAKDLEVQRM QMFMDTQVQL  300
ERIKRGKPSG SNGEIKNLSS LSFFNYFVSL LA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g016140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462559.10.0trihelix transcription factor ASIL2
TrEMBLA0A072V3I80.0A0A072V3I8_MEDTR; Transcription factor
STRINGXP_004485895.11e-141(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.18e-43sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]