PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g015890.2 | ||||||||
Common Name | MTR_2g015890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28716.7 Da PI: 8.1383 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 5.9e-13 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+riN +++Lr l+P++ +K++Ka+ L ++++ +k+L Medtr2g015890.2 69 KNHREAERKRRNRINGHLAKLRALVPSS-----PKMDKATLLAEVIRQVKHL 115 58*************************8.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.818 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.11E-12 | 69 | 117 | No hit | No description |
Pfam | PF00010 | 1.4E-10 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-13 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-13 | 70 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-11 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.01E-5 | 151 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDSSSDISRI LFNATSYRFG ASNETSRGGF VSTNSLVLDS EKGELVKSPP IINGEKKICD 60 ANKTLVALKN HREAERKRRN RINGHLAKLR ALVPSSPKMD KATLLAEVIR QVKHLKKNAD 120 EASKGYSIPT DDDEVKVEPY ENGGSFLYKA SISCDYRPEL LSDLRQTLDK LQLQLVREEI 180 STLGDRVKNE FVYTCCKVDI YDIELCPLIA SNVHQALSSV LERASTSMDY SLRTPRPCKQ 240 MQQTSTMSCN HEFCSC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.940 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g015890.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN833714 | 0.0 | JN833714.1 Medicago truncatula bHLH658 (bHLH658) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462544.1 | 0.0 | transcription factor bHLH106 isoform X1 | ||||
TrEMBL | A0A072V5E0 | 0.0 | A0A072V5E0_MEDTR; Transcription factor | ||||
STRING | AES64020 | 1e-150 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 3e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g015890.2 |
Entrez Gene | 11425915 |
Publications ? help Back to Top | |||
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