PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g015890.1 | ||||||||
Common Name | bHLH658, MTR_2g015890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24120.4 Da PI: 9.0026 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.4e-13 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+riN +++Lr l+P++ +K++Ka+ L ++++ +k+L Medtr2g015890.1 69 KNHREAERKRRNRINGHLAKLRALVPSS-----PKMDKATLLAEVIRQVKHL 115 58*************************8.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.818 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.24E-12 | 69 | 117 | No hit | No description |
Pfam | PF00010 | 1.0E-10 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-13 | 70 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-11 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDSSSDISRI LFNATSYRFG ASNETSRGGF VSTNSLVLDS EKGELVKSPP IINGEKKICD 60 ANKTLVALKN HREAERKRRN RINGHLAKLR ALVPSSPKMD KATLLAEVIR QVKHLKKNAD 120 EASKGYSIPT DDDEVKVEPY ENGGSFLYKA SISCDYRPEL LSDLRQTLDK LQLQLALSSV 180 LERASTSMDY SLRTPRPCKQ MQQTSTMSCN HEFCSC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.940 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g015890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN833714 | 0.0 | JN833714.1 Medicago truncatula bHLH658 (bHLH658) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593769.1 | 1e-160 | transcription factor bHLH106 isoform X2 | ||||
Refseq | XP_024632329.1 | 1e-160 | transcription factor bHLH106 isoform X2 | ||||
TrEMBL | G7ILJ0 | 1e-158 | G7ILJ0_MEDTR; BHLH658 | ||||
STRING | AES64020 | 1e-159 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g015890.1 |
Entrez Gene | 11425915 |
Publications ? help Back to Top | |||
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