PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g015050.1
Common NameMTR_2g015050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 277aa    MW: 31373.3 Da    PI: 5.1825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g015050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20133183255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrd s+   +  r++lg+f+tae+Aa a+++a+++++g
  Medtr2g015050.1 133 HYRGVRRRP-WGKYAAEIRDSSK---KgSRVWLGTFDTAEQAALAYDKAALRIRG 183
                      8********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-33132191IPR001471AP2/ERF domain
CDDcd000182.69E-31132192No hitNo description
PROSITE profilePS5103223.96133191IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23133192IPR016177DNA-binding domain
PfamPF008473.3E-14133183IPR001471AP2/ERF domain
SMARTSM003801.5E-38133197IPR001471AP2/ERF domain
PRINTSPR003674.0E-11134145IPR001471AP2/ERF domain
PRINTSPR003674.0E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MENIHIHIPN SNDHHATSEG SILENIWAKI TSSDARTNGN EAECSNTWEE LPNLGERDGS  60
MEILQRLPSL GRWISMGADY WEELLDDILP INAISNKEDF SCNKKMEIES VNKSKEKVEE  120
DGVRKEKKRV EKHYRGVRRR PWGKYAAEIR DSSKKGSRVW LGTFDTAEQA ALAYDKAALR  180
IRGSKACLNF PIESVANTNT LGYGKKGIVD VTKRESLLDS RKRGLRDRGE FVDVMNIEET  240
ANKKMAVLEL EDMLENDVFV FQDLGIDYLD SLLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29132192161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123140RKEKKRVEKHYRGVRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g015050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1997600.0AC199760.2 Medicago truncatula chromosome 2 BAC clone mth2-104L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593691.20.0ethylene-responsive transcription factor ERF094
TrEMBLA0A396J5G10.0A0A396J5G1_MEDTR; Putative transcription factor AP2-EREBP family
TrEMBLG7IFJ10.0G7IFJ1_MEDTR; Ethylene response factor
STRINGAES639420.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-35ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]