PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g015040.1
Common NameMTR_2g015040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 158aa    MW: 17624.7 Da    PI: 9.0348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g015040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1962112255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ k++g
  Medtr2g015040.1  62 HYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFQTAEEAAMAYDRAAFKMRG 112
                      8********.**********....33236*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3161121IPR001471AP2/ERF domain
CDDcd000182.39E-3161121No hitNo description
SuperFamilySSF541717.85E-2462121IPR016177DNA-binding domain
SMARTSM003804.2E-3762126IPR001471AP2/ERF domain
PfamPF008472.8E-1462112IPR001471AP2/ERF domain
PROSITE profilePS5103223.74962120IPR001471AP2/ERF domain
PRINTSPR003671.7E-116374IPR001471AP2/ERF domain
PRINTSPR003671.7E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVLLSQSQPE LPLNENDSQD MVIYQILNEA NALTNTYVPH RNHHHQAMLS CLEPTKTIAK  60
KHYRGVRRRP WGKYAAEIRD SARHGARVWL GTFQTAEEAA MAYDRAAFKM RGSKALLNFP  120
AETVAAASMQ IEFSNSKLNL NNSNSNNHHD SESSASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3361120463ATERF1
3gcc_A2e-3361120463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g015040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1997600.0AC199760.2 Medicago truncatula chromosome 2 BAC clone mth2-104L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593690.11e-115pathogenesis-related genes transcriptional activator PTI5
SwissprotO046814e-59PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLG7IFJ01e-114G7IFJ0_MEDTR; Ethylene response factor
STRINGAES639411e-115(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.19e-32ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]