PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g014340.1 | ||||||||
Common Name | MTR_2g014340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22077.6 Da PI: 8.2341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++ a+++++g Medtr2g014340.1 18 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDSAARQFRG 67 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.57E-31 | 17 | 75 | No hit | No description |
PROSITE profile | PS51032 | 23.749 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-38 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 18 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-14 | 18 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAPKVVKNGG VNGVKEAHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT AEEAARAYDS 60 AARQFRGPKA KTNFPFPIEN IKIHSPSQSS TVESSSRDRD AAADSSPLDL NLAPAFQHRF 120 TPMPAVNQTF CFDPVLRAGM VNSRSCYGYG FEYNPSMEAS GFHATVGAQS DSDSSSVIDL 180 NHHGRSFDFD LNYPPLEDML * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 15 | 78 | 2 | 66 | ATERF1 |
3gcc_A | 1e-21 | 15 | 78 | 2 | 66 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.14925 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, in cultured cells and at low levels in buds and leaves. Highly expressed in cell culture, especially during the exponential phase. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g014340.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155157 | 0.0 | AC155157.1 Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence. | |||
GenBank | BT137967 | 0.0 | BT137967.1 Medicago truncatula clone JCVI-FLMt-2J8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593630.1 | 1e-149 | ethylene-responsive transcription factor 4 | ||||
Swissprot | Q40477 | 2e-46 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A396J695 | 1e-147 | A0A396J695_MEDTR; Putative transcription factor AP2-EREBP family | ||||
TrEMBL | G7ISE8 | 1e-147 | G7ISE8_MEDTR; Ethylene response factor | ||||
STRING | AES63881 | 1e-148 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-27 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g014340.1 |
Entrez Gene | 11445604 |
Publications ? help Back to Top | |||
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