PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g014260.2
Common NameMTR_2g014260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 892aa    MW: 101847 Da    PI: 4.0502
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g014260.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07452472526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C ffa+ G+C +G++C+F H+
  Medtr2g014260.2 452 ICAFFAK-GWCIRGSSCSFLHV 472
                      6******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.399447474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5447471IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5452472IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MPNSDSSVED DPSLQEEEED EVDDDEEEEF EEVEVEEEEE DQEEEEEIEE VEQEEEEQEE  60
VEEEEEEEEI EEEEEDEVEE EEEEVEKEEV ETVVVEEEEE EEEEEEEEEE EEEEEEEEEE  120
AIESEHIKET IKVEEEEKEE EEEEEEEEEE EEEEEEKEEE EEEEEEEEEE EEEEMEDEEK  180
QEKIVVEEKD KDKDEVPNSL PDADKHSKEV EEEEEKEENE EAIDMEVEEE QETVVEKDKE  240
KDEVPDSLPD ADKRSKDSSQ HMELDVKEEN LGSVSHVPDN PEVIRPSHYM EENDAMSKAS  300
VSLHEELTLK NEDYPLKQKV ESPPKPSENL ISAEDGKNQG LNVDVENPGH LQRKASEGCS  360
EPDCNSKASL SDVMDIDSRA TKPSSDTGKD VVTGIILRDN FVEDADGDQN SKEKVMQSEM  420
ESTVDVKQKP SRTRIHSPSA EIKDGNKRPA IICAFFAKGW CIRGSSCSFL HVKDSVNNTD  480
QGAEGDVVTA HQKRELKLEK GVKENEEEAS PSWHPSHEKE KFLMRDSLFP ENKSAFNTSN  540
NYFSSNLSSY SSRAEEMIAI RNQHMYRGYT STKDFSSPLG ASALDSHAHK SSFSSDREDF  600
HLVGSSRVAP HANGYTLKTR SNWEPSVPFR PSFFITSMNV SSPRDLYDPL RNSIEIPNIG  660
DGSLKASLLI RGSSVQASSQ VRTYDDSAAV GKQMSDVNDD KSSVSSHHKF YENEPNRSSV  720
PRGKDCLATK AEITSGTCAN YQNGDIGVGQ YAFGVEDRIE TLKKRTEHDA RHHSDESEHK  780
KNRVAKDNKF HEMEVDFQTD GSVLKETKTL KIFHAVLVDL VKELLKPFWH EGRLSKDAHI  840
LIVKKSVDKV ISTLEPRQIP TTEDTAKQYV SLCRPKIAKL VHGYVNKHGK S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.239610.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g014260.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1468550.0AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462525.10.0ABC transporter F family member 4 isoform X2
TrEMBLA0A072VEF80.0A0A072VEF8_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRINGAES638740.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-29C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]