PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g014260.2 | ||||||||
Common Name | MTR_2g014260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 892aa MW: 101847 Da PI: 4.0502 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 452 | 472 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ffa+ G+C +G++C+F H+ Medtr2g014260.2 452 ICAFFAK-GWCIRGSSCSFLHV 472 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.399 | 447 | 474 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-5 | 447 | 471 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 452 | 472 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 892 aa Download sequence Send to blast |
MPNSDSSVED DPSLQEEEED EVDDDEEEEF EEVEVEEEEE DQEEEEEIEE VEQEEEEQEE 60 VEEEEEEEEI EEEEEDEVEE EEEEVEKEEV ETVVVEEEEE EEEEEEEEEE EEEEEEEEEE 120 AIESEHIKET IKVEEEEKEE EEEEEEEEEE EEEEEEKEEE EEEEEEEEEE EEEEMEDEEK 180 QEKIVVEEKD KDKDEVPNSL PDADKHSKEV EEEEEKEENE EAIDMEVEEE QETVVEKDKE 240 KDEVPDSLPD ADKRSKDSSQ HMELDVKEEN LGSVSHVPDN PEVIRPSHYM EENDAMSKAS 300 VSLHEELTLK NEDYPLKQKV ESPPKPSENL ISAEDGKNQG LNVDVENPGH LQRKASEGCS 360 EPDCNSKASL SDVMDIDSRA TKPSSDTGKD VVTGIILRDN FVEDADGDQN SKEKVMQSEM 420 ESTVDVKQKP SRTRIHSPSA EIKDGNKRPA IICAFFAKGW CIRGSSCSFL HVKDSVNNTD 480 QGAEGDVVTA HQKRELKLEK GVKENEEEAS PSWHPSHEKE KFLMRDSLFP ENKSAFNTSN 540 NYFSSNLSSY SSRAEEMIAI RNQHMYRGYT STKDFSSPLG ASALDSHAHK SSFSSDREDF 600 HLVGSSRVAP HANGYTLKTR SNWEPSVPFR PSFFITSMNV SSPRDLYDPL RNSIEIPNIG 660 DGSLKASLLI RGSSVQASSQ VRTYDDSAAV GKQMSDVNDD KSSVSSHHKF YENEPNRSSV 720 PRGKDCLATK AEITSGTCAN YQNGDIGVGQ YAFGVEDRIE TLKKRTEHDA RHHSDESEHK 780 KNRVAKDNKF HEMEVDFQTD GSVLKETKTL KIFHAVLVDL VKELLKPFWH EGRLSKDAHI 840 LIVKKSVDKV ISTLEPRQIP TTEDTAKQYV SLCRPKIAKL VHGYVNKHGK S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.23961 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g014260.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146855 | 0.0 | AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462525.1 | 0.0 | ABC transporter F family member 4 isoform X2 | ||||
TrEMBL | A0A072VEF8 | 0.0 | A0A072VEF8_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein | ||||
STRING | AES63874 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-29 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g014260.2 |
Entrez Gene | 11446813 |
Publications ? help Back to Top | |||
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