PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g014260.1
Common NameMTR_2g014260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 893aa    MW: 101947 Da    PI: 4.0502
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g014260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07453473526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C ffa+ G+C +G++C+F H+
  Medtr2g014260.1 453 ICAFFAK-GWCIRGSSCSFLHV 473
                      6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.26E-5448472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399448475IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5453473IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MPNSDSSVED DPSLQEEEED EVDDDEEEEF EEVEVEEEEE DQEEEEEIEE VEQEEEEQEE  60
VEEEEEEEEI EEEEEDEVEE EEEEVEKEEV ETVVVEEEEE EEEEEEEEEE EEEEEEEEEE  120
AIESEHIKET IKVEEEEKEE EEEEEEEEEE EEEEEEKEEE EEEEEEEEEE EEEEMEDEEK  180
QEKIVVEEKD KDKDEVPNSL PDADKHSKVE VEEEEEKEEN EEAIDMEVEE EQETVVEKDK  240
EKDEVPDSLP DADKRSKDSS QHMELDVKEE NLGSVSHVPD NPEVIRPSHY MEENDAMSKA  300
SVSLHEELTL KNEDYPLKQK VESPPKPSEN LISAEDGKNQ GLNVDVENPG HLQRKASEGC  360
SEPDCNSKAS LSDVMDIDSR ATKPSSDTGK DVVTGIILRD NFVEDADGDQ NSKEKVMQSE  420
MESTVDVKQK PSRTRIHSPS AEIKDGNKRP AIICAFFAKG WCIRGSSCSF LHVKDSVNNT  480
DQGAEGDVVT AHQKRELKLE KGVKENEEEA SPSWHPSHEK EKFLMRDSLF PENKSAFNTS  540
NNYFSSNLSS YSSRAEEMIA IRNQHMYRGY TSTKDFSSPL GASALDSHAH KSSFSSDRED  600
FHLVGSSRVA PHANGYTLKT RSNWEPSVPF RPSFFITSMN VSSPRDLYDP LRNSIEIPNI  660
GDGSLKASLL IRGSSVQASS QVRTYDDSAA VGKQMSDVND DKSSVSSHHK FYENEPNRSS  720
VPRGKDCLAT KAEITSGTCA NYQNGDIGVG QYAFGVEDRI ETLKKRTEHD ARHHSDESEH  780
KKNRVAKDNK FHEMEVDFQT DGSVLKETKT LKIFHAVLVD LVKELLKPFW HEGRLSKDAH  840
ILIVKKSVDK VISTLEPRQI PTTEDTAKQY VSLCRPKIAK LVHGYVNKHG KS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.239610.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g014260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1468550.0AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593623.10.0uncharacterized protein DDB_G0290301 isoform X1
TrEMBLG7ISE10.0G7ISE1_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRINGAES638740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-29C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]