PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g014060.1
Common NameMTR_2g014060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 337aa    MW: 34710.1 Da    PI: 9.827
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g014060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99.3e-382281362
           zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      + +kcprCds ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvP+Ggg+rk kks+
  Medtr2g014060.1 22 PQPQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPIGGGCRKGKKSK 81
                     6789***************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-261178IPR003851Zinc finger, Dof-type
PfamPF027011.8E-322479IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1832579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEQESGDGGR RGEMSKLVQA HPQPQKCPRC DSFNTKFCYY NNYSLSQPRF FCKTCRRYWT  60
QGGTLRNVPI GGGCRKGKKS KTPSSSTPSS NSSLSQPTLP QSTDQLTMAA MAKNSSSVFA  120
SFSSAASFYQ GGVVGYMSPF AAFNHSLNSN PSAHSASHTF EQSQNLGVGV GLGLGSSSNL  180
SLLQGFNVAA AALVSSSQGQ NRPPPQQFFQ LGGNGSGPMF TSQPRGLNLI PPSTMVNATT  240
SVATVSTAYN ENWPQSFINS GNNRASDQSL WSTISTTSIN GVGAGAGGSR GDVGVGGSRG  300
AGAGAGGNGS VGAGASGSAS LALNQWHDLS EFNPPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g014060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1468550.0AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593604.10.0dof zinc finger protein DOF5.6
TrEMBLG7ISC20.0G7ISC2_MEDTR; Dof domain zinc finger protein
STRINGAES638550.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.12e-32Dof family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]